Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SDD27957_01890 Genome accession   CM001076
Coordinates   383734..384420 (+) Length   228 a.a.
NCBI ID   EFY02062.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 378734..389420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_01865 - 378842..380218 (-) 1377 EFY02057.1 Putative V-type Na+-ATPase subunit J -
  SDD27957_01870 gidB 380302..381015 (-) 714 EFY02058.1 16S rRNA methyltransferase GidB -
  SDD27957_01875 - 381168..381725 (+) 558 EFY02059.1 LemA family protein -
  SDD27957_01880 - 381770..382663 (+) 894 EFY02060.1 heat shock protein HtpX -
  SDD27957_01885 - 382930..383463 (+) 534 EFY02061.1 hypothetical protein -
  SDD27957_01890 covR 383734..384420 (+) 687 EFY02062.1 response regulator protein Regulator
  SDD27957_01895 - 384426..385925 (+) 1500 EFY02063.1 transmembrane histidine kinase CsrS -
  SDD27957_01900 nrdR 386132..386626 (+) 495 EFY02064.1 transcriptional regulator NrdR -
  SDD27957_01905 - 386613..387788 (+) 1176 EFY02065.1 replicative DNA helicase -
  SDD27957_01910 - 387789..388691 (+) 903 EFY02066.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26567.56 Da        Isoelectric Point: 4.6541

>NTDB_id=20026 SDD27957_01890 EFY02062.1 383734..384420(+) (covR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLSILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=20026 SDD27957_01890 EFY02062.1 383734..384420(+) (covR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACAAAGAAAATTTTAATTATTGAAGATGAAAAGAACCTTGCACGGTTCGTTTCACTCGAATTGCAACATGAAGGTTA
CGAAGTAACTGTTGAAGTAAATGGTCGCGAAGGTTTAGAAACTGCCTTAGAAAAGGATTTTGACTTAATCCTCCTTGACC
TAATGCTTCCTGAAATGGATGGTTTTGAAGTGACTCGTCGCTTACAAACTGAAAAAACAACTTACATTATGATGATGACT
GCGCGTGATTCGATTATGGATGTGGTTGCGGGGTTAGACCGTGGAGCGGATGATTACATTGTGAAGCCATTTGCAATTGA
AGAGTTATTGGCTCGTATCCGTGCCATTTTCCGTCGCCAAGATATCGAATCTGAGAAGAAGACCCCTAGTCAAGGGATTT
ACCGTGATTTGGTCTTGAACCCACAAAACCGTTCAGTTAACAGAGGAGATGATGAAATCTCTTTGACGAAACGTGAATAT
GATTTGCTTAGCATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAGTTATTGTCAAATGTTTGGAAATACGA
TGAAGCTGTTGAAACAAATGTAGTGGATGTTTATATTCGTTACCTTCGCGGCAAAATCGATATTCCAGGTAAGGAGTCTT
ATATCCAAACCGTTCGCGGTATGGGCTATGTTATTCGTGAGAAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.401

99.561

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.443
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment