Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BIZ42_RS14475 Genome accession   NZ_CP017483
Coordinates   3276463..3277002 (+) Length   179 a.a.
NCBI ID   WP_019185702.1    Uniprot ID   -
Organism   Stenotrophomonas sp. LM091     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3271463..3282002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ42_RS14450 (BIZ42_14450) - 3272022..3272438 (-) 417 WP_070426820.1 hypothetical protein -
  BIZ42_RS14455 (BIZ42_14455) - 3272435..3273034 (-) 600 WP_070426821.1 sigma-70 family RNA polymerase sigma factor -
  BIZ42_RS14460 (BIZ42_14460) - 3273148..3273474 (+) 327 WP_019185699.1 hypothetical protein -
  BIZ42_RS14465 (BIZ42_14465) - 3273615..3275111 (+) 1497 WP_070426822.1 serine hydrolase domain-containing protein -
  BIZ42_RS14470 (BIZ42_14470) - 3275118..3276149 (-) 1032 WP_019185701.1 LacI family DNA-binding transcriptional regulator -
  BIZ42_RS14475 (BIZ42_14475) ssb 3276463..3277002 (+) 540 WP_019185702.1 single-stranded DNA-binding protein Machinery gene
  BIZ42_RS14480 (BIZ42_14480) - 3277422..3278324 (+) 903 WP_172838081.1 TIM barrel protein -
  BIZ42_RS14485 (BIZ42_14485) - 3278351..3280036 (+) 1686 WP_070426823.1 GMC family oxidoreductase -
  BIZ42_RS14490 (BIZ42_14490) - 3280036..3280611 (+) 576 WP_070426824.1 gluconate 2-dehydrogenase subunit 3 family protein -
  BIZ42_RS14495 (BIZ42_14495) - 3280611..3281369 (+) 759 WP_083279942.1 DUF1080 domain-containing protein -
  BIZ42_RS14500 (BIZ42_14500) - 3281400..3281696 (-) 297 WP_070426826.1 cytochrome c -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18974.81 Da        Isoelectric Point: 5.3177

>NTDB_id=198719 BIZ42_RS14475 WP_019185702.1 3276463..3277002(+) (ssb) [Stenotrophomonas sp. LM091]
MARGINKVILVGNLGNDPDVKYTQGGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SLRYDKYTGQDGVEKYSTDIIADEMQMLGGREGGGGGGGGGERPQRQQAPRQEYGGGGGGGGGQRGGGGGGYGQQRPQQQ
APQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=198719 BIZ42_RS14475 WP_019185702.1 3276463..3277002(+) (ssb) [Stenotrophomonas sp. LM091]
ATGGCGCGCGGCATCAATAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAGGGCGGTAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTCCGCAAGGACAAGGATGGCAACCAGCAGGAGCGTACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCTGGTGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
AGCCTGCGTTACGACAAGTACACCGGTCAGGATGGCGTGGAGAAGTATTCCACCGACATCATCGCCGATGAAATGCAGAT
GCTCGGCGGCCGTGAAGGCGGTGGTGGCGGTGGCGGTGGCGGCGAACGTCCGCAGCGCCAGCAGGCCCCGCGCCAGGAGT
ACGGCGGTGGCGGCGGCGGCGGTGGTGGTCAGCGTGGCGGTGGTGGTGGTGGCTACGGCCAGCAGCGCCCGCAGCAGCAG
GCTCCGCAGCAGTCGGCGCCGCCGATGGACGACTTCGCTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.774

100

0.486
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.458
  ssb Neisseria meningitidis MC58

41.209

100

0.419
  ssb Neisseria gonorrhoeae MS11

41.209

100

0.419

Multiple sequence alignment