Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BJJ97_RS01200 Genome accession   NZ_CP017481
Coordinates   265737..266282 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium polaris strain NIBIO1006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 260737..271282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJJ97_RS01185 (BJJ97_01160) - 261542..262039 (+) 498 WP_095992843.1 M48 family metallopeptidase -
  BJJ97_RS01190 (BJJ97_01165) - 262217..262636 (-) 420 WP_095992844.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  BJJ97_RS01195 (BJJ97_01170) uvrA 262652..265486 (-) 2835 WP_095700538.1 excinuclease ABC subunit UvrA -
  BJJ97_RS01200 (BJJ97_01175) ssb 265737..266282 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BJJ97_RS01205 (BJJ97_01180) - 266378..267226 (-) 849 WP_095992845.1 SDR family NAD(P)-dependent oxidoreductase -
  BJJ97_RS01210 (BJJ97_01185) - 267282..268123 (-) 842 Protein_232 oxidoreductase -
  BJJ97_RS01215 (BJJ97_01190) - 268510..269520 (-) 1011 WP_095992846.1 AraC family transcriptional regulator -
  BJJ97_RS01220 (BJJ97_01195) - 269786..270244 (+) 459 WP_095992847.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=198661 BJJ97_RS01200 WP_010295128.1 265737..266282(+) (ssb) [Pectobacterium polaris strain NIBIO1006]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=198661 BJJ97_RS01200 WP_010295128.1 265737..266282(+) (ssb) [Pectobacterium polaris strain NIBIO1006]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGCGTGGTCCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGACGCCAAGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAACAACGCCCAGCA
CAGAACAGCGCTCCAGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment