Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LPB072_RS22450 Genome accession   NZ_CP017476
Coordinates   4841076..4841645 (-) Length   189 a.a.
NCBI ID   WP_066096425.1    Uniprot ID   -
Organism   Hydrogenophaga crassostreae strain LPB0072     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4836076..4846645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB072_RS22425 (LPB072_22425) - 4836644..4836994 (+) 351 WP_066096412.1 phage holin family protein -
  LPB072_RS22430 (LPB072_22430) - 4836977..4838524 (-) 1548 WP_096349137.1 M48 family metalloprotease -
  LPB072_RS22435 (LPB072_22435) moaC 4838678..4839193 (+) 516 WP_066096415.1 cyclic pyranopterin monophosphate synthase MoaC -
  LPB072_RS22440 (LPB072_22440) - 4839222..4840010 (-) 789 WP_066096417.1 hypothetical protein -
  LPB072_RS22445 (LPB072_22445) pilE 4840020..4840586 (-) 567 WP_066096421.1 pilin Machinery gene
  LPB072_RS22450 (LPB072_22450) pilE 4841076..4841645 (-) 570 WP_066096425.1 pilin Machinery gene
  LPB072_RS22455 (LPB072_22455) - 4841862..4842665 (-) 804 WP_066096429.1 3',5'-cyclic-nucleotide phosphodiesterase -
  LPB072_RS22460 (LPB072_22460) - 4842713..4844962 (-) 2250 WP_066096432.1 CHASE2 domain-containing protein -
  LPB072_RS22465 (LPB072_22465) - 4845042..4845668 (-) 627 WP_066096435.1 FHA domain-containing protein -
  LPB072_RS22470 (LPB072_22470) - 4845715..4846497 (-) 783 WP_066096437.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 18868.87 Da        Isoelectric Point: 8.4849

>NTDB_id=198614 LPB072_RS22450 WP_066096425.1 4841076..4841645(-) (pilE) [Hydrogenophaga crassostreae strain LPB0072]
MKRSMQKGFTLIELMIVVAIIGILAAVALPAYQDYAVRAKVSEAVIAASSVKGVMSEAFQTGGIGAMDAAAAGINSTAVV
EKASKYVMNICVQQPATAAACAAPGAGATWAINVAIAATAANGIPTGLNGSEITFSPNVQQAVPTAAVSGAIDWACVSST
ASTATARGLVNRVAPTIALPAKYAPAECR

Nucleotide


Download         Length: 570 bp        

>NTDB_id=198614 LPB072_RS22450 WP_066096425.1 4841076..4841645(-) (pilE) [Hydrogenophaga crassostreae strain LPB0072]
ATGAAGCGTTCCATGCAAAAAGGTTTCACCCTCATCGAACTGATGATCGTGGTGGCCATCATCGGTATTCTGGCTGCCGT
GGCTCTGCCCGCTTACCAGGATTACGCCGTTCGTGCCAAAGTGAGCGAGGCCGTGATCGCTGCCTCTTCCGTGAAGGGTG
TGATGAGTGAGGCCTTCCAGACTGGTGGCATTGGTGCCATGGACGCAGCAGCCGCTGGTATCAACTCCACGGCGGTCGTT
GAGAAGGCCTCCAAGTATGTGATGAATATTTGCGTTCAACAGCCTGCGACCGCAGCAGCTTGCGCTGCGCCCGGTGCGGG
TGCTACCTGGGCGATCAACGTCGCCATCGCTGCCACGGCTGCGAATGGTATTCCCACTGGCTTGAACGGCAGCGAAATCA
CCTTTTCTCCAAACGTGCAACAAGCAGTTCCTACCGCTGCAGTCTCGGGCGCGATTGACTGGGCTTGCGTAAGTTCGACC
GCGAGCACTGCAACGGCTCGTGGCCTGGTCAACCGTGTCGCTCCCACCATTGCGCTGCCAGCCAAGTACGCACCTGCTGA
GTGCCGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-29)

Pilin (bacterial filament) (Pilin)

(37-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

54.271

100

0.571
  pilA Ralstonia pseudosolanacearum GMI1000

37.306

100

0.381
  comP Acinetobacter baylyi ADP1

39.13

97.354

0.381

Multiple sequence alignment