Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | LPB072_RS22445 | Genome accession | NZ_CP017476 |
| Coordinates | 4840020..4840586 (-) | Length | 188 a.a. |
| NCBI ID | WP_066096421.1 | Uniprot ID | A0A162SPK2 |
| Organism | Hydrogenophaga crassostreae strain LPB0072 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4835020..4845586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB072_RS22415 (LPB072_22415) | - | 4835174..4835578 (-) | 405 | WP_066096406.1 | DUF3717 domain-containing protein | - |
| LPB072_RS22420 (LPB072_22420) | - | 4835891..4836613 (+) | 723 | WP_066096409.1 | TerC family protein | - |
| LPB072_RS22425 (LPB072_22425) | - | 4836644..4836994 (+) | 351 | WP_066096412.1 | phage holin family protein | - |
| LPB072_RS22430 (LPB072_22430) | - | 4836977..4838524 (-) | 1548 | WP_096349137.1 | M48 family metalloprotease | - |
| LPB072_RS22435 (LPB072_22435) | moaC | 4838678..4839193 (+) | 516 | WP_066096415.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| LPB072_RS22440 (LPB072_22440) | - | 4839222..4840010 (-) | 789 | WP_066096417.1 | hypothetical protein | - |
| LPB072_RS22445 (LPB072_22445) | pilE | 4840020..4840586 (-) | 567 | WP_066096421.1 | pilin | Machinery gene |
| LPB072_RS22450 (LPB072_22450) | pilE | 4841076..4841645 (-) | 570 | WP_066096425.1 | pilin | Machinery gene |
| LPB072_RS22455 (LPB072_22455) | - | 4841862..4842665 (-) | 804 | WP_066096429.1 | 3',5'-cyclic-nucleotide phosphodiesterase | - |
| LPB072_RS22460 (LPB072_22460) | - | 4842713..4844962 (-) | 2250 | WP_066096432.1 | CHASE2 domain-containing protein | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 19123.06 Da Isoelectric Point: 8.4737
>NTDB_id=198613 LPB072_RS22445 WP_066096421.1 4840020..4840586(-) (pilE) [Hydrogenophaga crassostreae strain LPB0072]
MKSSNHRGFTLIELMIVVAIIGILAAVALPAYQDYAVRAKTSEAVVAASAAKTFMSEGYSADTVAGLSSAAAAFNLVPLA
DKQSKYVANMCVQTPGVVGTVCTPFAGSATWPIYVTLAANAANGIPTPLNGLTFVLSPNVNGVAPTAASQGPIDWACAGT
TNATATARGMANRVLGTLPAKYLPAECR
MKSSNHRGFTLIELMIVVAIIGILAAVALPAYQDYAVRAKTSEAVVAASAAKTFMSEGYSADTVAGLSSAAAAFNLVPLA
DKQSKYVANMCVQTPGVVGTVCTPFAGSATWPIYVTLAANAANGIPTPLNGLTFVLSPNVNGVAPTAASQGPIDWACAGT
TNATATARGMANRVLGTLPAKYLPAECR
Nucleotide
Download Length: 567 bp
>NTDB_id=198613 LPB072_RS22445 WP_066096421.1 4840020..4840586(-) (pilE) [Hydrogenophaga crassostreae strain LPB0072]
ATGAAGAGCTCAAACCACCGTGGTTTCACGCTAATTGAACTGATGATCGTTGTGGCCATCATCGGCATCCTTGCGGCCGT
TGCGTTGCCTGCCTATCAAGACTACGCAGTTCGGGCCAAAACGTCAGAAGCCGTTGTGGCCGCATCGGCAGCGAAGACTT
TCATGAGCGAGGGATACAGTGCAGACACGGTGGCGGGCTTGAGTTCAGCAGCCGCAGCGTTCAATCTTGTACCACTTGCG
GACAAGCAGTCGAAGTATGTGGCCAACATGTGCGTGCAAACGCCGGGCGTTGTTGGCACGGTTTGTACGCCATTTGCTGG
CAGCGCCACTTGGCCGATCTACGTGACCCTGGCTGCGAATGCGGCCAATGGCATCCCAACTCCGCTCAATGGTCTGACTT
TTGTGTTGTCTCCAAACGTCAACGGCGTCGCACCCACGGCGGCGTCTCAGGGCCCGATAGATTGGGCGTGCGCTGGGACC
ACCAATGCCACCGCGACCGCTCGTGGCATGGCGAATCGTGTGCTGGGCACCTTGCCAGCCAAGTATTTGCCCGCAGAGTG
CAGATAA
ATGAAGAGCTCAAACCACCGTGGTTTCACGCTAATTGAACTGATGATCGTTGTGGCCATCATCGGCATCCTTGCGGCCGT
TGCGTTGCCTGCCTATCAAGACTACGCAGTTCGGGCCAAAACGTCAGAAGCCGTTGTGGCCGCATCGGCAGCGAAGACTT
TCATGAGCGAGGGATACAGTGCAGACACGGTGGCGGGCTTGAGTTCAGCAGCCGCAGCGTTCAATCTTGTACCACTTGCG
GACAAGCAGTCGAAGTATGTGGCCAACATGTGCGTGCAAACGCCGGGCGTTGTTGGCACGGTTTGTACGCCATTTGCTGG
CAGCGCCACTTGGCCGATCTACGTGACCCTGGCTGCGAATGCGGCCAATGGCATCCCAACTCCGCTCAATGGTCTGACTT
TTGTGTTGTCTCCAAACGTCAACGGCGTCGCACCCACGGCGGCGTCTCAGGGCCCGATAGATTGGGCGTGCGCTGGGACC
ACCAATGCCACCGCGACCGCTCGTGGCATGGCGAATCGTGTGCTGGGCACCTTGCCAGCCAAGTATTTGCCCGCAGAGTG
CAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
48.223 |
100 |
0.505 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
39.796 |
100 |
0.415 |