Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BJG87_RS11800 Genome accession   NZ_CP017463
Coordinates   2404273..2404788 (-) Length   171 a.a.
NCBI ID   WP_046467357.1    Uniprot ID   A0AAW7YTV2
Organism   Staphylococcus pasteuri strain JS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2399273..2409788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG87_RS11770 (BJG87_11570) - 2400095..2400346 (-) 252 WP_046467359.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BJG87_RS11775 (BJG87_11575) - 2400591..2400833 (+) 243 WP_017637492.1 hypothetical protein -
  BJG87_RS11780 (BJG87_11580) - 2400906..2401424 (-) 519 WP_029056593.1 VOC family protein -
  BJG87_RS11785 (BJG87_11585) - 2401872..2402585 (-) 714 WP_232515334.1 HNH endonuclease family protein -
  BJG87_RS11790 (BJG87_11590) - 2402633..2403733 (-) 1101 WP_096807862.1 DUF262 domain-containing protein -
  BJG87_RS11795 (BJG87_11595) rpsR 2403987..2404229 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  BJG87_RS11800 (BJG87_11600) ssbA 2404273..2404788 (-) 516 WP_046467357.1 single-stranded DNA-binding protein Machinery gene
  BJG87_RS11805 (BJG87_11605) rpsF 2404810..2405106 (-) 297 WP_017637495.1 30S ribosomal protein S6 -
  BJG87_RS11810 (BJG87_11610) - 2405485..2406306 (+) 822 WP_046467356.1 GH25 family lysozyme -
  BJG87_RS11815 (BJG87_11615) - 2406371..2406562 (+) 192 WP_017637497.1 hypothetical protein -
  BJG87_RS11820 (BJG87_11620) ychF 2406694..2407791 (-) 1098 WP_017637498.1 redox-regulated ATPase YchF -
  BJG87_RS11825 (BJG87_11625) - 2407803..2408006 (-) 204 WP_017637499.1 DUF951 domain-containing protein -
  BJG87_RS11830 (BJG87_11630) - 2408027..2408905 (-) 879 WP_046467355.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18872.46 Da        Isoelectric Point: 4.7410

>NTDB_id=198538 BJG87_RS11800 WP_046467357.1 2404273..2404788(-) (ssbA) [Staphylococcus pasteuri strain JS7]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTLYNNNSSKSNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=198538 BJG87_RS11800 WP_046467357.1 2404273..2404788(-) (ssbA) [Staphylococcus pasteuri strain JS7]
ATGATAAATAGAGTTGTATTAGTAGGTCGTTTGACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTAACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAACGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTTGTATAACAACAATTCATCTAAATCTAATTCAAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

53.179

100

0.538
  ssb Glaesserella parasuis strain SC1401

34.392

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

65.497

0.374

Multiple sequence alignment