Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BJD96_RS13400 Genome accession   NZ_CP017460
Coordinates   2771882..2772388 (-) Length   168 a.a.
NCBI ID   WP_096811066.1    Uniprot ID   A0A291JNZ1
Organism   Staphylococcus nepalensis strain JS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2766882..2777388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD96_RS13365 (BJD96_13185) - 2767043..2768356 (-) 1314 WP_096811060.1 LysM peptidoglycan-binding domain-containing protein -
  BJD96_RS13375 (BJD96_13195) - 2768976..2769299 (+) 324 WP_096811062.1 hypothetical protein -
  BJD96_RS13380 (BJD96_13200) - 2769628..2770116 (-) 489 WP_096811063.1 GNAT family N-acetyltransferase -
  BJD96_RS13385 (BJD96_13205) - 2770277..2770807 (-) 531 WP_096811064.1 hypothetical protein -
  BJD96_RS13390 (BJD96_13210) - 2770943..2771197 (-) 255 WP_096811065.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BJD96_RS13395 (BJD96_13215) rpsR 2771590..2771832 (-) 243 WP_042737618.1 30S ribosomal protein S18 -
  BJD96_RS13400 (BJD96_13220) ssbA 2771882..2772388 (-) 507 WP_096811066.1 single-stranded DNA-binding protein Machinery gene
  BJD96_RS13405 (BJD96_13225) rpsF 2772407..2772712 (-) 306 WP_096811067.1 30S ribosomal protein S6 -
  BJD96_RS13410 (BJD96_13230) - 2773120..2773917 (+) 798 WP_096811068.1 GH25 family lysozyme -
  BJD96_RS13415 (BJD96_13235) - 2774062..2774568 (-) 507 WP_232514235.1 PadR family transcriptional regulator -
  BJD96_RS13420 (BJD96_13240) - 2774671..2775177 (+) 507 WP_096811070.1 phenolic acid decarboxylase -
  BJD96_RS13425 (BJD96_13245) ychF 2775283..2776380 (-) 1098 WP_096811071.1 redox-regulated ATPase YchF -
  BJD96_RS13430 (BJD96_13250) - 2776381..2776596 (-) 216 WP_096811072.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18756.35 Da        Isoelectric Point: 5.7443

>NTDB_id=198503 BJD96_RS13400 WP_096811066.1 2771882..2772388(-) (ssbA) [Staphylococcus nepalensis strain JS1]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNNNSSNHNQSNNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=198503 BJD96_RS13400 WP_096811066.1 2771882..2772388(-) (ssbA) [Staphylococcus nepalensis strain JS1]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCGGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGCGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAGCAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTTGTCTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CCAAAATCAGCGTCATGCTCAAGAAGGAAATAATAATTTCCAAAACTTTGGTGGACAACAATCTGGACAAAACACGTCTT
CTTATCAAAATAATAACAATAATTCATCAAATCATAATCAATCAAACAACCCATTTGCGAACGCAAACGGACCTATTGAT
ATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291JNZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.878

100

0.667
  ssb Latilactobacillus sakei subsp. sakei 23K

57.558

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

65.476

0.387
  ssb Glaesserella parasuis strain SC1401

34.043

100

0.381

Multiple sequence alignment