Detailed information NTG0198316

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: BJJ98_RS16325
• Genome accession: NZ_CP017454
• Coordinates: 3705540..3706091 (-)
• Length: 183 a.a.
• NCBI ID: WP_022634792.1
• Uniprot ID: -
• Organism: Dickeya solani strain PPO 9019
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3692031..3706091	3705540..3706091	within	0

Gene organization within MGE regions

Location: 3692031..3706091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJJ98_RS16250 (BJJ98_15825)	-	3692031..3696155 (-)	4125	WP_022634806.1	baseplate J/gp47 family protein	-
BJJ98_RS16255 (BJJ98_15830)	-	3696152..3696571 (-)	420	WP_022634805.1	GPW/gp25 family protein	-
BJJ98_RS16260 (BJJ98_15835)	-	3696574..3696873 (-)	300	WP_022634804.1	PAAR domain-containing protein	-
BJJ98_RS16270 (BJJ98_15840)	vgrG	3697332..3699122 (-)	1791	WP_022634803.1	type VI secretion system tip protein VgrG	-
BJJ98_RS16275 (BJJ98_15845)	-	3699134..3699781 (-)	648	WP_022634802.1	hypothetical protein	-
BJJ98_RS16280 (BJJ98_15850)	-	3699797..3699979 (-)	183	WP_022634801.1	hypothetical protein	-
BJJ98_RS16285 (BJJ98_15855)	-	3700000..3700458 (-)	459	WP_023637986.1	phage tail protein	-
BJJ98_RS16290 (BJJ98_15860)	-	3700545..3701015 (-)	471	WP_022634799.1	phage tail protein	-
BJJ98_RS16295 (BJJ98_15865)	-	3701067..3702620 (-)	1554	WP_022634798.1	phage tail sheath family protein	-
BJJ98_RS16300 (BJJ98_15870)	-	3702765..3703562 (-)	798	WP_022634797.1	hypothetical protein	-
BJJ98_RS16305 (BJJ98_15875)	-	3703568..3704140 (-)	573	WP_022634796.1	DUF4255 domain-containing protein	-
BJJ98_RS16310 (BJJ98_15880)	-	3704403..3704891 (-)	489	WP_022634795.1	hypothetical protein	-
BJJ98_RS16315 (BJJ98_15885)	-	3705070..3705255 (+)	186	WP_022634794.1	hypothetical protein	-
BJJ98_RS16325 (BJJ98_15890)	ssb	3705540..3706091 (-)	552	WP_022634792.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19717.72 Da
• Isoelectric Point: 4.9658

>NTDB_id=198316 BJJ98_RS16325 WP_022634792.1 3705540..3706091(-) (ssb) [Dickeya solani strain PPO 9019]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=198316 BJJ98_RS16325 WP_022634792.1 3705540..3706091(-) (ssb) [Dickeya solani strain PPO 9019]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.054	100	0.749
ssb	Glaesserella parasuis strain SC1401	54.645	100	0.546
ssb	Neisseria meningitidis MC58	45.503	100	0.47
ssb	Neisseria gonorrhoeae MS11	45.503	100	0.47