Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CD007_RS13960 Genome accession   NZ_CP021903
Coordinates   2693262..2693957 (-) Length   231 a.a.
NCBI ID   WP_041850180.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2688262..2698957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS13935 (CD007_13935) minD 2689198..2690004 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  CD007_RS13940 (CD007_13940) minC 2690006..2690686 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  CD007_RS13945 (CD007_13945) mreD 2690739..2691257 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  CD007_RS13950 (CD007_13950) mreC 2691254..2692126 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  CD007_RS13955 (CD007_13955) mreB 2692157..2693170 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  CD007_RS13960 (CD007_13960) ysxA/radC 2693262..2693957 (-) 696 WP_041850180.1 DNA repair protein RadC Machinery gene
  CD007_RS13965 (CD007_13965) maf 2693994..2694563 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  CD007_RS13970 (CD007_13970) spoIIB 2694717..2695715 (-) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  CD007_RS13975 (CD007_13975) comC 2695849..2696595 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  CD007_RS13980 (CD007_13980) folC 2696735..2698027 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26167.49 Da        Isoelectric Point: 7.9141

>NTDB_id=198170 CD007_RS13960 WP_041850180.1 2693262..2693957(-) (ysxA/radC) [Bacillus subtilis strain ge28]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILATVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=198170 CD007_RS13960 WP_041850180.1 2693262..2693957(-) (ysxA/radC) [Bacillus subtilis strain ge28]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTACAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424