Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BI364_RS12515 Genome accession   NZ_CP017415
Coordinates   2608522..2609013 (-) Length   163 a.a.
NCBI ID   WP_070079034.1    Uniprot ID   A0A1D8IQG2
Organism   Acidihalobacter yilgarnensis strain F5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2603522..2614013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI364_RS18945 - 2603647..2603769 (+) 123 WP_267887958.1 hypothetical protein -
  BI364_RS17530 (BI364_12480) - 2603766..2604173 (-) 408 WP_233279515.1 hypothetical protein -
  BI364_RS19225 - 2604209..2604277 (-) 69 Protein_2500 hypothetical protein -
  BI364_RS12485 (BI364_12485) - 2604504..2604686 (+) 183 WP_070079028.1 hypothetical protein -
  BI364_RS12495 (BI364_12495) - 2605874..2606122 (+) 249 WP_070079030.1 hypothetical protein -
  BI364_RS12500 (BI364_12500) - 2606226..2606435 (-) 210 WP_070079031.1 hypothetical protein -
  BI364_RS12505 (BI364_12505) - 2606451..2606672 (-) 222 WP_070079032.1 hypothetical protein -
  BI364_RS18400 - 2606762..2606977 (+) 216 WP_197495703.1 hypothetical protein -
  BI364_RS12510 (BI364_12510) - 2607261..2608373 (+) 1113 WP_070079033.1 hypothetical protein -
  BI364_RS12515 (BI364_12515) ssb 2608522..2609013 (-) 492 WP_070079034.1 single-stranded DNA-binding protein Machinery gene
  BI364_RS12520 (BI364_12520) - 2609080..2610474 (-) 1395 WP_070079035.1 MFS transporter -
  BI364_RS12525 (BI364_12525) uvrA 2610636..2613488 (+) 2853 WP_070079036.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17658.57 Da        Isoelectric Point: 5.2651

>NTDB_id=197991 BI364_RS12515 WP_070079034.1 2608522..2609013(-) (ssb) [Acidihalobacter yilgarnensis strain F5]
MARGVNKVILIGNLGGDPEVRYMPSGGAVTNVTLATTESWKDKNSGDRQERTEWHRVVFFNKLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEVVASDMQMLGGRAGGTAGFDAPAAQERQPAAAPAPAASSRAPAQQQPPAHQEAPIDFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=197991 BI364_RS12515 WP_070079034.1 2608522..2609013(-) (ssb) [Acidihalobacter yilgarnensis strain F5]
ATGGCCAGAGGCGTCAACAAAGTCATTTTGATCGGCAACCTCGGGGGCGATCCCGAGGTGCGTTACATGCCTAGCGGCGG
CGCGGTGACCAATGTCACCCTCGCGACCACCGAGAGCTGGAAGGACAAGAACAGCGGCGATCGCCAGGAACGCACTGAAT
GGCACCGCGTGGTGTTCTTCAACAAGCTTGCCGAGATTGCGGGTGAATACCTGCGCAAGGGTTCCCAGGTCTATGTCGAG
GGTAGCCTGCGTACGCGCAAGTGGCAGGGCCAGGACGGTCAAGACCGCTACACCACCGAAGTCGTTGCCTCCGACATGCA
GATGCTTGGCGGTCGCGCAGGCGGCACGGCCGGCTTCGATGCCCCAGCCGCGCAGGAGCGCCAACCAGCTGCAGCCCCAG
CTCCGGCTGCTAGCAGCCGCGCCCCGGCCCAGCAGCAGCCGCCAGCGCACCAGGAAGCGCCCATCGATTTTGATGACGAT
ATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8IQG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.932

100

0.669
  ssb Glaesserella parasuis strain SC1401

51.685

100

0.564
  ssb Neisseria meningitidis MC58

51.429

100

0.552
  ssb Neisseria gonorrhoeae MS11

50.857

100

0.546

Multiple sequence alignment