Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   S100761_RS14195 Genome accession   NZ_CP021889
Coordinates   2633025..2633720 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. subtilis strain SRCM100761     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2628025..2638720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100761_RS14170 (S100761_02822) minD 2628961..2629767 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  S100761_RS14175 (S100761_02823) minC 2629769..2630449 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  S100761_RS14180 (S100761_02824) mreD 2630502..2631020 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  S100761_RS14185 (S100761_02825) mreC 2631017..2631889 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  S100761_RS14190 (S100761_02826) mreB 2631920..2632933 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  S100761_RS14195 (S100761_02827) ysxA/radC 2633025..2633720 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  S100761_RS14200 (S100761_02828) maf 2633757..2634326 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  S100761_RS14205 (S100761_02829) spoIIB 2634479..2635477 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  S100761_RS14210 (S100761_02830) comC 2635611..2636357 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  S100761_RS14215 (S100761_02831) folC 2636497..2637789 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=197873 S100761_RS14195 WP_003246034.1 2633025..2633720(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain SRCM100761]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=197873 S100761_RS14195 WP_003246034.1 2633025..2633720(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain SRCM100761]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCACCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGAAGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424