Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XCCCN15_RS05440 Genome accession   NZ_CP017323
Coordinates   1256209..1257603 (-) Length   464 a.a.
NCBI ID   WP_040940803.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris str. CN15     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1244303..1262546 1256209..1257603 within 0


Gene organization within MGE regions


Location: 1244303..1262546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCCCN15_RS05390 pilA/pilAI 1244303..1244701 (+) 399 WP_040940799.1 pilin Machinery gene
  XCCCN15_RS05395 - 1244806..1245228 (+) 423 WP_040940800.1 pilin -
  XCCCN15_RS05400 - 1245287..1247107 (+) 1821 WP_162866362.1 hypothetical protein -
  XCCCN15_RS05405 - 1247231..1247989 (+) 759 WP_080640038.1 class I SAM-dependent methyltransferase -
  XCCCN15_RS05410 - 1248411..1249172 (+) 762 WP_162866363.1 glycosyltransferase family 9 protein -
  XCCCN15_RS23230 - 1249175..1250017 (-) 843 WP_162866364.1 glycosyltransferase -
  XCCCN15_RS05420 - 1250011..1251183 (-) 1173 WP_162866365.1 glycosyltransferase -
  XCCCN15_RS05425 - 1251168..1252031 (-) 864 WP_080640041.1 glycosyltransferase -
  XCCCN15_RS05430 - 1252081..1252932 (-) 852 WP_108133901.1 glycosyltransferase family 2 protein -
  XCCCN15_RS05435 pilB 1253088..1254824 (+) 1737 WP_040940802.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCCCN15_RS05440 pilR 1256209..1257603 (-) 1395 WP_040940803.1 sigma-54 dependent transcriptional regulator Regulator
  XCCCN15_RS05445 - 1257813..1259423 (-) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  XCCCN15_RS05450 sucC 1259657..1260826 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  XCCCN15_RS05455 sucD 1260851..1261726 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  XCCCN15_RS05460 - 1261830..1262240 (+) 411 WP_029217117.1 DNA-binding protein -
  XCCCN15_RS05465 - 1262244..1262546 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50299.65 Da        Isoelectric Point: 6.3588

>NTDB_id=197711 XCCCN15_RS05440 WP_040940803.1 1256209..1257603(-) (pilR) [Xanthomonas campestris pv. campestris str. CN15]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLT
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=197711 XCCCN15_RS05440 WP_040940803.1 1256209..1257603(-) (pilR) [Xanthomonas campestris pv. campestris str. CN15]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CGGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGACG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCGTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAGGAGAATCGCTGGAACAAGACCAGAACCGCCGCGCAGCTCGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

99.784

0.627
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment