Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q5W_RS18820 Genome accession   NZ_CP017311
Coordinates   3953719..3954225 (-) Length   168 a.a.
NCBI ID   WP_009519856.1    Uniprot ID   A0A1L1PP99
Organism   Hydrogenophaga sp. PBC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3948719..3959225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5W_RS18800 (Q5W_18800) - 3949057..3951318 (-) 2262 WP_069903026.1 PAS domain S-box protein -
  Q5W_RS18805 (Q5W_18805) - 3951422..3952198 (+) 777 WP_009519853.1 hypothetical protein -
  Q5W_RS18810 (Q5W_18810) - 3952283..3952702 (-) 420 WP_009519854.1 hypothetical protein -
  Q5W_RS18815 (Q5W_18815) - 3952895..3953554 (-) 660 WP_009519855.1 response regulator transcription factor -
  Q5W_RS18820 (Q5W_18820) ssb 3953719..3954225 (-) 507 WP_009519856.1 single-stranded DNA-binding protein Machinery gene
  Q5W_RS18825 (Q5W_18825) - 3954350..3955840 (+) 1491 WP_009519857.1 chloride channel protein -
  Q5W_RS18830 (Q5W_18830) - 3955841..3957010 (-) 1170 WP_069903027.1 MFS transporter -
  Q5W_RS18835 (Q5W_18835) - 3957161..3958534 (-) 1374 WP_069903028.1 CoA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17903.03 Da        Isoelectric Point: 6.9856

>NTDB_id=197578 Q5W_RS18820 WP_009519856.1 3953719..3954225(-) (ssb) [Hydrogenophaga sp. PBC]
MASVNKVILVGNCGRDPEIRYLPSGQAVANVSVATSSRRKDRNSGEMIEETQWHRVTFYDRLAEIAGEYVKKGRPIYVEG
RLKYGKYTDQAGVERNTVDIIATEMQLLGGREGMGGGDDGGAPPRSAAAPRSGAGTGARPAPAPRAAPAPAPARQPTGFD
DMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=197578 Q5W_RS18820 WP_009519856.1 3953719..3954225(-) (ssb) [Hydrogenophaga sp. PBC]
ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAACTGTGGCCGCGACCCCGAAATCCGCTACCTTCCCTCGGGCCAGGC
CGTGGCCAACGTGAGCGTGGCCACCTCGAGCCGCCGCAAGGACCGCAACTCGGGCGAGATGATCGAAGAGACGCAATGGC
ACCGCGTGACCTTCTACGACCGCCTCGCCGAGATCGCCGGTGAGTACGTCAAGAAGGGCAGGCCGATCTACGTCGAAGGG
CGCCTGAAGTACGGCAAGTACACCGACCAGGCGGGCGTTGAACGCAACACGGTGGACATCATCGCCACCGAAATGCAGTT
GCTCGGCGGTCGCGAGGGCATGGGCGGTGGTGACGACGGCGGCGCCCCGCCGCGCAGCGCGGCGGCGCCCCGGTCGGGCG
CGGGTACCGGCGCCCGACCGGCACCGGCTCCGAGGGCCGCACCGGCCCCTGCGCCGGCGCGCCAGCCCACCGGCTTCGAC
GACATGGACGACGACATCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L1PP99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

49.718

100

0.524
  ssb Neisseria meningitidis MC58

49.143

100

0.512
  ssb Vibrio cholerae strain A1552

44.505

100

0.482
  ssb Glaesserella parasuis strain SC1401

41.622

100

0.458

Multiple sequence alignment