Detailed information NTG0197567

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q5W_RS02440
• Genome accession: NZ_CP017311
• Coordinates: 486074..486931 (-)
• Length: 285 a.a.
• NCBI ID: WP_009516504.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. PBC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 481074..491931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5W_RS02410 (Q5W_02410)	argJ	481886..483133 (+)	1248	WP_009516498.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
Q5W_RS02415 (Q5W_02415)	-	483130..484008 (+)	879	WP_009516499.1	ATP-binding protein	-
Q5W_RS02420 (Q5W_02420)	-	484005..484454 (+)	450	WP_009516500.1	NUDIX domain-containing protein	-
Q5W_RS02425 (Q5W_02425)	-	484468..484665 (-)	198	WP_009516501.1	DNA gyrase inhibitor YacG	-
Q5W_RS02430 (Q5W_02430)	zapD	484670..485425 (-)	756	WP_009516502.1	cell division protein ZapD	-
Q5W_RS25590 (Q5W_02435)	coaE	485469..486077 (-)	609	WP_009516503.1	dephospho-CoA kinase	-
Q5W_RS02440 (Q5W_02440)	pilD	486074..486931 (-)	858	WP_009516504.1	A24 family peptidase	Machinery gene
Q5W_RS02445 (Q5W_02445)	pilC	486931..488148 (-)	1218	WP_009516505.1	type II secretion system F family protein	Machinery gene
Q5W_RS02450 (Q5W_02450)	pilB	488183..489913 (-)	1731	WP_035620178.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q5W_RS02460 (Q5W_02460)	-	490194..491123 (-)	930	WP_138820106.1	polyprenyl synthetase family protein	-
Q5W_RS02465 (Q5W_02465)	rplU	491398..491709 (+)	312	WP_009516508.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30343.90 Da
• Isoelectric Point: 7.6011

>NTDB_id=197567 Q5W_RS02440 WP_009516504.1 486074..486931(-) (pilD) [Hydrogenophaga sp. PBC]
MGELATGAPAVALLGVLGLLVGSFLNVVIHRLPKMMERQWAAECAELQGKANETETPTARYNLVVPRSACPHCGHVIHWY
ENIPVLSYLALRGRCSQCHAGIGLRYPTVEVATGLLFAWVGWRWGFTFTGLAWCGFAAAVVALACIDWDTTLLPDDITLP
LLWAGIVAAALGLTSTRLPEAVWGAVGGYLSLWLIYWGFKLLTGKEGMGYGDFKLFAAFGAWFGWPALVPIILMASVIGA
VIGIGIKLVGRLREGGYVPFGPFLALGGLTAMVFGPAAILAAVGL

Nucleotide

• Length: 858 bp

>NTDB_id=197567 Q5W_RS02440 WP_009516504.1 486074..486931(-) (pilD) [Hydrogenophaga sp. PBC]
ATGGGCGAGTTGGCGACCGGTGCGCCCGCCGTGGCGCTGTTGGGCGTGCTCGGCCTGCTGGTGGGCAGTTTCCTGAACGT
CGTCATCCACCGCCTGCCCAAGATGATGGAGCGGCAGTGGGCCGCCGAATGCGCCGAGCTGCAGGGCAAGGCCAATGAGA
CCGAAACACCGACCGCGCGCTACAACCTGGTCGTGCCACGGTCCGCCTGCCCCCATTGCGGGCACGTCATTCATTGGTAT
GAAAACATCCCGGTGCTGAGCTACCTCGCCTTGCGAGGACGTTGCAGCCAATGCCACGCCGGCATCGGTCTGCGCTACCC
CACGGTCGAGGTCGCCACAGGCCTCCTCTTCGCCTGGGTCGGCTGGCGCTGGGGGTTCACGTTCACCGGGCTGGCCTGGT
GCGGTTTTGCCGCGGCCGTCGTGGCACTGGCCTGCATCGACTGGGACACCACGCTACTGCCGGACGACATCACACTGCCG
CTGCTGTGGGCCGGTATCGTGGCCGCGGCGCTCGGCCTGACCTCGACCCGCCTGCCCGAAGCCGTGTGGGGCGCCGTCGG
CGGCTACCTCTCGCTCTGGCTCATCTACTGGGGCTTCAAGCTGCTCACTGGCAAGGAGGGTATGGGCTACGGCGACTTCA
AGCTGTTCGCGGCCTTCGGCGCCTGGTTTGGCTGGCCAGCCTTGGTGCCCATCATCCTGATGGCCTCGGTGATCGGCGCA
GTCATCGGCATCGGCATCAAACTGGTGGGCCGCTTGCGCGAAGGGGGCTACGTGCCCTTCGGCCCCTTCCTCGCCCTCGG
CGGGCTTACCGCCATGGTATTCGGTCCGGCGGCCATCCTGGCCGCCGTCGGCCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.311	93.684	0.481
pilD	Vibrio campbellii strain DS40M4	48.134	94.035	0.453
pilD	Neisseria gonorrhoeae MS11	47.059	95.439	0.449
pilD	Acinetobacter baumannii D1279779	44.074	94.737	0.418
pilD	Acinetobacter nosocomialis M2	42.963	94.737	0.407