Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | WH25_RS10350 | Genome accession | NZ_CP017295 |
| Coordinates | 2160332..2161285 (-) | Length | 317 a.a. |
| NCBI ID | WP_046164731.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain IE35 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2155332..2166285
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WH25_RS10330 (WH25_10330) | - | 2156001..2157332 (-) | 1332 | WP_046164763.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| WH25_RS10335 (WH25_10335) | folP | 2157337..2158302 (-) | 966 | WP_046164729.1 | dihydropteroate synthase | - |
| WH25_RS10340 (WH25_10340) | - | 2158379..2159044 (-) | 666 | WP_046164730.1 | CPBP family intramembrane glutamic endopeptidase | - |
| WH25_RS10345 (WH25_10345) | - | 2159092..2160282 (-) | 1191 | WP_045634156.1 | acetate kinase | - |
| WH25_RS10350 (WH25_10350) | comYH | 2160332..2161285 (-) | 954 | WP_046164731.1 | class I SAM-dependent methyltransferase | Machinery gene |
| WH25_RS10355 (WH25_10355) | comGG | 2161316..2161747 (-) | 432 | WP_231108792.1 | competence type IV pilus minor pilin ComGG | - |
| WH25_RS10360 (WH25_10360) | comGF/cglF | 2161728..2162165 (-) | 438 | WP_046164732.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| WH25_RS10365 (WH25_10365) | comGE/cglE | 2162149..2162442 (-) | 294 | WP_046164733.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| WH25_RS10370 (WH25_10370) | comYD | 2162414..2162842 (-) | 429 | WP_069097080.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| WH25_RS10375 (WH25_10375) | comYC | 2162802..2163119 (-) | 318 | WP_012130940.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| WH25_RS10380 (WH25_10380) | comYB | 2163116..2164150 (-) | 1035 | WP_046164735.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| WH25_RS10385 (WH25_10385) | comYA | 2164083..2165021 (-) | 939 | WP_046164736.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| WH25_RS10390 (WH25_10390) | - | 2165123..2165491 (-) | 369 | WP_046164737.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36006.21 Da Isoelectric Point: 4.9649
>NTDB_id=197447 WH25_RS10350 WP_046164731.1 2160332..2161285(-) (comYH) [Streptococcus gordonii strain IE35]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSKEEWRRAYQFILMKGAQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMCSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKADGYAIFLAPNHLLTSPQ
SDLLKSWLKYNASLVAMIALPEKLFASASQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSKEEWRRAYQFILMKGAQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMCSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKADGYAIFLAPNHLLTSPQ
SDLLKSWLKYNASLVAMIALPEKLFASASQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN
Nucleotide
Download Length: 954 bp
>NTDB_id=197447 WH25_RS10350 WP_046164731.1 2160332..2161285(-) (comYH) [Streptococcus gordonii strain IE35]
ATGAATTTTGAAAAAATCGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTGATAGAGCAAAACGGTATCTATTTGGATGGGCAAACGGACTTAGAAATTGTCAAAAAGAATCATC
AGACCTTGAAGAGCTTAAAGCTAAGTAAAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGGTGCTCAGACA
GAGCCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAGATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGTGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGTGATCTGCCTGTCGG
TTACTATCCAGATGATCAGATTGCAAGTCGTTATCAAGTAGCCAGTCAGACAGAGCATACCTATGCTCATCATCTATTGA
TGGAGCAGGCATTAAAGTATTTGAAAGCTGATGGTTATGCTATCTTCTTAGCTCCTAATCACCTCTTGACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAATACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGCCTCTCAGGCTAAGACGGTTTTTGTTTTGCAAAAACAAAAAAATATAAAAGCAGAGCCTTTTGTCTATGCATTGGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
ATGAATTTTGAAAAAATCGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTGATAGAGCAAAACGGTATCTATTTGGATGGGCAAACGGACTTAGAAATTGTCAAAAAGAATCATC
AGACCTTGAAGAGCTTAAAGCTAAGTAAAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGGTGCTCAGACA
GAGCCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAGATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGTGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGTGATCTGCCTGTCGG
TTACTATCCAGATGATCAGATTGCAAGTCGTTATCAAGTAGCCAGTCAGACAGAGCATACCTATGCTCATCATCTATTGA
TGGAGCAGGCATTAAAGTATTTGAAAGCTGATGGTTATGCTATCTTCTTAGCTCCTAATCACCTCTTGACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAATACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGCCTCTCAGGCTAAGACGGTTTTTGTTTTGCAAAAACAAAAAAATATAAAAGCAGAGCCTTTTGTCTATGCATTGGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
59.105 |
98.738 |
0.584 |
| comYH | Streptococcus mutans UA140 |
59.105 |
98.738 |
0.584 |