Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WH25_RS10170 Genome accession   NZ_CP017295
Coordinates   2129180..2129671 (-) Length   163 a.a.
NCBI ID   WP_046164707.1    Uniprot ID   A0A0F5MML9
Organism   Streptococcus gordonii strain IE35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2124180..2134671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS10135 (WH25_10135) - 2124197..2125012 (+) 816 WP_046164701.1 hypothetical protein -
  WH25_RS10140 (WH25_10140) - 2125015..2125482 (+) 468 WP_046164702.1 hypothetical protein -
  WH25_RS10145 (WH25_10145) - 2125607..2125801 (-) 195 WP_046164703.1 DUF1648 domain-containing protein -
  WH25_RS10150 (WH25_10150) - 2125801..2127411 (-) 1611 WP_046164704.1 hypothetical protein -
  WH25_RS10155 (WH25_10155) - 2127338..2128051 (-) 714 WP_046164705.1 ABC transporter ATP-binding protein -
  WH25_RS10160 (WH25_10160) - 2128192..2128848 (-) 657 WP_080998581.1 TetR/AcrR family transcriptional regulator -
  WH25_RS10165 (WH25_10165) rpsR 2128902..2129141 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  WH25_RS10170 (WH25_10170) ssb 2129180..2129671 (-) 492 WP_046164707.1 single-stranded DNA-binding protein Machinery gene
  WH25_RS10175 (WH25_10175) rpsF 2129688..2129978 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  WH25_RS10180 (WH25_10180) folE 2130190..2130753 (+) 564 WP_008810025.1 GTP cyclohydrolase I FolE -
  WH25_RS10185 (WH25_10185) - 2130801..2131622 (+) 822 WP_046164708.1 PrsW family glutamic-type intramembrane protease -
  WH25_RS10190 (WH25_10190) - 2131716..2132474 (-) 759 WP_045634141.1 epoxyqueuosine reductase QueH -
  WH25_RS10195 (WH25_10195) groL 2132598..2134220 (-) 1623 WP_046164709.1 chaperonin GroEL -
  WH25_RS10200 (WH25_10200) groES 2134243..2134524 (-) 282 WP_012130907.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18183.90 Da        Isoelectric Point: 5.2060

>NTDB_id=197444 WH25_RS10170 WP_046164707.1 2129180..2129671(-) (ssb) [Streptococcus gordonii strain IE35]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAQSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=197444 WH25_RS10170 WP_046164707.1 2129180..2129671(-) (ssb) [Streptococcus gordonii strain IE35]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTTAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTTGGAATTACAGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGATAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACAAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5MML9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment