Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | A4W86_RS02780 | Genome accession | NZ_CP017272 |
| Coordinates | 564486..564914 (+) | Length | 142 a.a. |
| NCBI ID | WP_154255254.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.1239 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 559486..569914
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W86_RS02765 (A4W86_02745) | - | 561064..562152 (+) | 1089 | WP_035144637.1 | MraY family glycosyltransferase | - |
| A4W86_RS02770 (A4W86_02750) | - | 562179..562844 (-) | 666 | WP_025016329.1 | YigZ family protein | - |
| A4W86_RS02775 (A4W86_02755) | comFA | 562906..564243 (+) | 1338 | WP_142501193.1 | DEAD/DEAH box helicase | Machinery gene |
| A4W86_RS02780 (A4W86_02760) | comFC | 564486..564914 (+) | 429 | WP_154255254.1 | ComF family protein | Machinery gene |
| A4W86_RS02785 (A4W86_02765) | raiA | 565041..565586 (+) | 546 | WP_011374202.1 | ribosome-associated translation inhibitor RaiA | - |
| A4W86_RS02790 (A4W86_02770) | secA | 565835..568198 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
| A4W86_RS02795 (A4W86_02775) | prfB | 568268..569384 (+) | 1117 | WP_099049013.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16678.13 Da Isoelectric Point: 10.0721
>NTDB_id=197181 A4W86_RS02780 WP_154255254.1 564486..564914(+) (comFC) [Latilactobacillus sakei strain TMW 1.1239]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR
Nucleotide
Download Length: 429 bp
>NTDB_id=197181 A4W86_RS02780 WP_154255254.1 564486..564914(+) (comFC) [Latilactobacillus sakei strain TMW 1.1239]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
95.775 |
100 |
0.958 |
| comFC | Lactococcus lactis subsp. cremoris KW2 |
38.028 |
100 |
0.38 |