Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   A4W86_RS02775 Genome accession   NZ_CP017272
Coordinates   562906..564243 (+) Length   445 a.a.
NCBI ID   WP_142501193.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557906..569243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS02760 (A4W86_02740) rny 559343..560908 (+) 1566 WP_011374197.1 ribonuclease Y -
  A4W86_RS02765 (A4W86_02745) - 561064..562152 (+) 1089 WP_035144637.1 MraY family glycosyltransferase -
  A4W86_RS02770 (A4W86_02750) - 562179..562844 (-) 666 WP_025016329.1 YigZ family protein -
  A4W86_RS02775 (A4W86_02755) comFA 562906..564243 (+) 1338 WP_142501193.1 DEAD/DEAH box helicase Machinery gene
  A4W86_RS02780 (A4W86_02760) comFC 564486..564914 (+) 429 WP_154255254.1 ComF family protein Machinery gene
  A4W86_RS02785 (A4W86_02765) raiA 565041..565586 (+) 546 WP_011374202.1 ribosome-associated translation inhibitor RaiA -
  A4W86_RS02790 (A4W86_02770) secA 565835..568198 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 50346.74 Da        Isoelectric Point: 9.7862

>NTDB_id=197180 A4W86_RS02775 WP_142501193.1 562906..564243(+) (comFA) [Latilactobacillus sakei strain TMW 1.1239]
MGQQVIACGRQFTAAQLADTQNNNYSLPQIKRRPAFLRVKHRLVCQRCQQVVPPQTCLPDGRHYCAQCLLFGRLVEGDWL
YTVPECHLFENNIPKLTWEGQLTPHQEQAAQAVVEVVQTQKRHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGHLLPEPQRHVAFNWRAQLKKGRLPKRLERDCQTCLKTQQILLFVPQVR
LLQPVANRLSTLLPAVRIETLHANDPDQIKKITAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYAQNPVHFYYQDYTRAIKGACRQIKAQNQRGRRLQSTV

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=197180 A4W86_RS02775 WP_142501193.1 562906..564243(+) (comFA) [Latilactobacillus sakei strain TMW 1.1239]
ATGGGACAACAAGTAATTGCCTGTGGTCGCCAGTTTACGGCGGCCCAGTTAGCCGATACGCAAAATAATAACTATAGTTT
ACCACAGATTAAGCGGCGACCTGCGTTTTTACGGGTCAAGCACCGCTTAGTCTGCCAACGTTGTCAGCAAGTGGTGCCGC
CGCAAACCTGCTTACCAGATGGGCGCCATTATTGCGCGCAATGTTTGTTATTTGGTCGTTTGGTAGAGGGCGATTGGTTA
TACACGGTACCGGAGTGTCATTTATTCGAAAATAACATACCAAAATTGACGTGGGAGGGGCAATTAACACCGCATCAGGA
ACAAGCTGCCCAAGCGGTGGTTGAGGTGGTTCAAACACAAAAACGGCACGTATTAACGGCCGTGACCGGTGCAGGGAAGA
CTGAGATGCTTTTTCAAGGAATTTTAGTTGCGCTTCAAAAGGGTCAGCGGGTATGTCTGGCAGCGCCTAGAGTCGCCGTT
TGCTTGGAACTTTATCCGCGCCTGCAAGCCGCCTTTGCAACGACTAGTATCATGTTGATGCACGGTGAGCAAACTGAGCC
CTATCGCTATACGCAGTTAGTGATTTGCACGACGCATCAGTTGCTAAAGTTTTATCACGCATTTGACACGGTGATTGTCG
ATGAGGTCGATGCTTTTCCTTTTGTTGATAATCCCGTTTTAGCCACGGCAGTTGAACAAGCCTGCAAGCCCCAATGTGCT
TTATTATATTTAACGGCGACCCCGACCCCCGCCATCAAACGCGCGATTGCTGCTAAACAAATGACGGTTAGCGAATTACC
GCTTCGGTTCCATGGTCATCTATTACCAGAACCACAGCGGCACGTCGCTTTTAATTGGCGGGCCCAATTAAAAAAAGGCC
GGTTACCTAAACGGCTTGAACGGGATTGCCAGACTTGCTTAAAAACGCAACAGATTTTGTTATTCGTGCCGCAAGTGCGG
TTATTGCAACCAGTTGCCAATCGGTTATCAACCTTATTGCCGGCGGTCAGGATTGAAACATTGCATGCTAACGATCCGGA
TCAGATTAAAAAGATTACGGCGTTTAGAGCACAACAAATTCAGCTAATGGTGACGACCACCATTTTAGAACGGGGCGTTA
CGTTTAAAAACGTTGCAGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAACGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCGGGACGGCATAAAGATTATGCCCAAAATCCGGTTCATTTTTATTATCAAGACTATACGCGGGCGATCAAAGGCGC
TTGTCGGCAAATTAAGGCCCAAAATCAGAGGGGACGGCGATTACAATCAACTGTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(101-248)

Helicase conserved C-terminal domain (Helicase_C)

(307-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

99.326

100

0.993
  comFA/cflA Streptococcus pneumoniae TIGR4

38.979

96.854

0.378
  comFA/cflA Streptococcus pneumoniae R6

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae D39

38.747

96.854

0.375
  comFA/cflA Streptococcus pneumoniae Rx1

38.747

96.854

0.375
  comFA/cflA Streptococcus mitis SK321

38.515

96.854

0.373
  comFA/cflA Streptococcus mitis NCTC 12261

38.283

96.854

0.371

Multiple sequence alignment