Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH88_RS06910 Genome accession   NZ_CP021840
Coordinates   1347400..1348068 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain EC974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342400..1353068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS06880 (CDH88_06875) rfaQ 1342578..1343636 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CDH88_RS06885 (CDH88_06880) waaA 1344049..1345326 (+) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CDH88_RS06890 (CDH88_06885) coaD 1345334..1345813 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CDH88_RS06895 (CDH88_06890) mutM 1345852..1346661 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CDH88_RS06900 (CDH88_06895) rpmG 1346759..1346926 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CDH88_RS06905 (CDH88_06900) rpmB 1346947..1347183 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CDH88_RS06910 (CDH88_06905) radC 1347400..1348068 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CDH88_RS06915 (CDH88_06910) coaBC 1348240..1349460 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CDH88_RS06920 (CDH88_06915) dut 1349438..1349896 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CDH88_RS06925 (CDH88_06920) slmA 1350003..1350599 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CDH88_RS06930 (CDH88_06925) pyrE 1350636..1351277 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CDH88_RS06935 (CDH88_06930) rph 1351343..1352059 (-) 717 WP_001247089.1 ribonuclease PH -
  CDH88_RS06945 (CDH88_06940) yicC 1352186..1353049 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=196587 CDH88_RS06910 WP_001297375.1 1347400..1348068(-) (radC) [Escherichia coli strain EC974]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=196587 CDH88_RS06910 WP_001297375.1 1347400..1348068(-) (radC) [Escherichia coli strain EC974]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAATTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment