Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   BHS00_RS01480 Genome accession   NZ_CP017194
Coordinates   300900..301592 (+) Length   230 a.a.
NCBI ID   WP_079507359.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 295900..306592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS01465 (BHS00_01450) - 297403..298338 (+) 936 WP_079507365.1 manganese-dependent inorganic pyrophosphatase -
  BHS00_RS01470 (BHS00_01455) - 298500..299036 (+) 537 WP_079507363.1 YceD family protein -
  BHS00_RS01475 (BHS00_01460) gndA 299294..300715 (+) 1422 WP_079507361.1 NADP-dependent phosphogluconate dehydrogenase -
  BHS00_RS01480 (BHS00_01465) covR 300900..301592 (+) 693 WP_079507359.1 response regulator transcription factor Regulator
  BHS00_RS01485 (BHS00_01470) - 301858..303351 (+) 1494 WP_079507357.1 HAMP domain-containing sensor histidine kinase -
  BHS00_RS01490 (BHS00_01475) - 303613..304851 (+) 1239 WP_079507355.1 ammonium transporter -
  BHS00_RS01495 (BHS00_01480) - 304889..305230 (+) 342 WP_047916198.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26757.49 Da        Isoelectric Point: 5.2604

>NTDB_id=196524 BHS00_RS01480 WP_079507359.1 300900..301592(+) (covR) [Lactococcus carnosus strain TMW 2.1612]
MVKKILIIEDEKQLARFVSLELEHEGYSVVVRHDGRSGLEAAMAQDWDMILLDLMLPELDGFEVARRLRNEKQTPITMMT
ARDSTMDKVAGLDIGADDYITKPFAIEELLAHLRANFRRQDREIQKRKKTDGTTFRDLTINKKNRQVERGGEVIDLTKRE
YDLLTTLMKNVNDVVTREQLVQNVWGYDEGTETNVVDVYIRYLRNKLDQDGKDSYIQTVRGLGYMLRENN

Nucleotide


Download         Length: 693 bp        

>NTDB_id=196524 BHS00_RS01480 WP_079507359.1 300900..301592(+) (covR) [Lactococcus carnosus strain TMW 2.1612]
ATGGTAAAGAAAATTCTTATTATTGAAGATGAAAAACAATTAGCACGATTTGTGTCACTTGAACTAGAACATGAGGGGTA
CAGTGTTGTTGTACGTCATGATGGTCGTAGTGGTCTTGAAGCAGCGATGGCTCAAGATTGGGATATGATCCTCTTAGACT
TGATGTTACCTGAGTTAGACGGATTTGAAGTTGCCCGTCGCTTACGTAATGAGAAACAAACACCGATTACGATGATGACT
GCGCGTGATAGTACCATGGATAAAGTAGCTGGTCTTGACATTGGTGCAGATGACTACATTACAAAACCGTTTGCCATTGA
AGAATTACTGGCGCATTTACGTGCTAATTTCCGTCGTCAAGATCGTGAAATTCAAAAGCGTAAAAAAACTGATGGGACAA
CCTTCCGTGATTTGACGATTAATAAAAAGAATCGTCAAGTAGAACGTGGTGGAGAAGTGATCGACTTGACAAAACGTGAG
TATGATTTATTGACGACACTGATGAAAAATGTCAATGATGTTGTGACGCGTGAACAACTTGTTCAAAACGTATGGGGATA
TGATGAAGGAACAGAGACAAACGTTGTTGATGTTTATATTCGTTACCTACGTAACAAATTAGATCAAGATGGTAAAGATT
CATATATTCAAACAGTTCGTGGGTTAGGTTACATGTTACGTGAAAATAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

75.221

98.261

0.739
  covR Streptococcus salivarius strain HSISS4

67.105

99.13

0.665
  micA Streptococcus pneumoniae Cp1015

43.348

100

0.439
  vicR Streptococcus mutans UA159

41.379

100

0.417

Multiple sequence alignment