Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CDL16_RS25510 Genome accession   NZ_CP021775
Coordinates   5247439..5248497 (-) Length   352 a.a.
NCBI ID   WP_003086123.1    Uniprot ID   Q02IC9
Organism   Pseudomonas aeruginosa strain Pa58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5242439..5253497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS25480 (CDL16_25475) pal 5242880..5243386 (-) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -
  CDL16_RS25485 (CDL16_25480) tolB 5243439..5244737 (-) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  CDL16_RS25490 (CDL16_25485) tolA 5244734..5245777 (-) 1044 WP_003134218.1 cell envelope integrity protein TolA -
  CDL16_RS25495 (CDL16_25490) tolR 5245780..5246220 (-) 441 WP_003086126.1 protein TolR -
  CDL16_RS25500 (CDL16_25495) tolQ 5246243..5246938 (-) 696 WP_003086125.1 protein TolQ -
  CDL16_RS25505 (CDL16_25500) ybgC 5246940..5247386 (-) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  CDL16_RS25510 (CDL16_25505) ruvB 5247439..5248497 (-) 1059 WP_003086123.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CDL16_RS25515 (CDL16_25510) ruvA 5248508..5249113 (-) 606 WP_003134220.1 Holliday junction branch migration protein RuvA -
  CDL16_RS25520 (CDL16_25515) ruvC 5249130..5249654 (-) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  CDL16_RS25525 (CDL16_25520) - 5249739..5250485 (-) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CDL16_RS25530 (CDL16_25525) aspS 5250552..5252327 (-) 1776 WP_003123218.1 aspartate--tRNA ligase -
  CDL16_RS25535 (CDL16_25530) - 5252767..5253237 (+) 471 WP_003086103.1 Dps family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38932.67 Da        Isoelectric Point: 5.1792

>NTDB_id=196433 CDL16_RS25510 WP_003086123.1 5247439..5248497(-) (ruvB) [Pseudomonas aeruginosa strain Pa58]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=196433 CDL16_RS25510 WP_003086123.1 5247439..5248497(-) (ruvB) [Pseudomonas aeruginosa strain Pa58]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAAGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACTAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGTCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCTTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02IC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491

Multiple sequence alignment