Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BHS08_RS05620 Genome accession   NZ_CP017173
Coordinates   1316562..1317068 (+) Length   168 a.a.
NCBI ID   WP_140787940.1    Uniprot ID   A0AAE6KQR6
Organism   Myxococcus xanthus strain MC3.3.5c16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1311562..1322068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS08_RS05600 (BHS08_05485) - 1312121..1312582 (+) 462 WP_090485059.1 PTS sugar transporter subunit IIA -
  BHS08_RS05605 (BHS08_05490) - 1312616..1313461 (+) 846 WP_140787935.1 hypothetical protein -
  BHS08_RS05610 (BHS08_05495) dtd 1313458..1313919 (-) 462 WP_140787937.1 D-aminoacyl-tRNA deacylase -
  BHS08_RS05615 (BHS08_05500) dacB 1314105..1316351 (+) 2247 WP_140787939.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  BHS08_RS05620 (BHS08_05505) ssb 1316562..1317068 (+) 507 WP_140787940.1 single-stranded DNA-binding protein Machinery gene
  BHS08_RS05625 (BHS08_05510) - 1317191..1317871 (-) 681 WP_140787942.1 succinate dehydrogenase -
  BHS08_RS05630 (BHS08_05515) - 1318134..1319018 (+) 885 WP_140797386.1 Hsp33 family molecular chaperone HslO -
  BHS08_RS05635 (BHS08_05520) - 1319041..1320084 (+) 1044 WP_237080200.1 Leu/Phe/Val dehydrogenase -
  BHS08_RS05640 (BHS08_05525) - 1320215..1320907 (+) 693 WP_140797387.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17769.48 Da        Isoelectric Point: 5.7963

>NTDB_id=196294 BHS08_RS05620 WP_140787940.1 1316562..1317068(+) (ssb) [Myxococcus xanthus strain MC3.3.5c16]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGG
NGDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=196294 BHS08_RS05620 WP_140787940.1 1316562..1317068(+) (ssb) [Myxococcus xanthus strain MC3.3.5c16]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGGGGCCGTGACGCCGGAGACGGCATGGGTGGTGGCGGTGGCGGGGGCGGGGGCGGTGGACGCCGGCAGT
TCTCCCAGCCGCGCGGGGGAGACAACAATGACTATGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGC
AACGGCGACGACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.541

100

0.518
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.452
  ssb Neisseria gonorrhoeae MS11

41.111

100

0.44
  ssb Neisseria meningitidis MC58

41.477

100

0.435

Multiple sequence alignment