Detailed information NTG0196294

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CDG41_RS07495
• Genome accession: NZ_CP021774
• Coordinates: 1587883..1588887 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Pa124
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1582883..1593887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG41_RS07465 (CDG41_07460)	fghA	1582975..1583826 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
CDG41_RS07470 (CDG41_07465)	ispF	1583897..1584370 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CDG41_RS07475 (CDG41_07470)	truD	1584367..1585434 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
CDG41_RS07480 (CDG41_07475)	surE	1585422..1586171 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CDG41_RS07485 (CDG41_07480)	-	1586204..1586839 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CDG41_RS07490 (CDG41_07485)	-	1586885..1587778 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
CDG41_RS07495 (CDG41_07490)	rpoS	1587883..1588887 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CDG41_RS07500 (CDG41_07495)	fdxA	1589314..1589637 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CDG41_RS07505 (CDG41_07500)	mutS	1589704..1592271 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
CDG41_RS07515 (CDG41_07510)	-	1592397..1593404 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=196294 CDG41_RS07495 WP_003113871.1 1587883..1588887(+) (rpoS) [Pseudomonas aeruginosa strain Pa124]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=196294 CDG41_RS07495 WP_003113871.1 1587883..1588887(+) (rpoS) [Pseudomonas aeruginosa strain Pa124]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653