Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BHS07_RS05470 | Genome accession | NZ_CP017172 |
| Coordinates | 1276357..1276863 (+) | Length | 168 a.a. |
| NCBI ID | WP_140787940.1 | Uniprot ID | A0AAE6KQR6 |
| Organism | Myxococcus xanthus strain KF4.3.9c1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1271357..1281863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHS07_RS05450 (BHS07_05355) | - | 1271916..1272377 (+) | 462 | WP_090485059.1 | PTS sugar transporter subunit IIA | - |
| BHS07_RS05455 (BHS07_05360) | - | 1272411..1273256 (+) | 846 | WP_140853168.1 | hypothetical protein | - |
| BHS07_RS05460 (BHS07_05365) | dtd | 1273253..1273714 (-) | 462 | WP_140787937.1 | D-aminoacyl-tRNA deacylase | - |
| BHS07_RS05465 (BHS07_05370) | dacB | 1273900..1276146 (+) | 2247 | WP_140873429.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| BHS07_RS05470 (BHS07_05375) | ssb | 1276357..1276863 (+) | 507 | WP_140787940.1 | single-stranded DNA-binding protein | Machinery gene |
| BHS07_RS05475 (BHS07_05380) | - | 1276986..1277666 (-) | 681 | WP_140787942.1 | succinate dehydrogenase | - |
| BHS07_RS05480 (BHS07_05385) | - | 1277929..1278813 (+) | 885 | WP_140797386.1 | Hsp33 family molecular chaperone HslO | - |
| BHS07_RS05485 (BHS07_05390) | - | 1278836..1279879 (+) | 1044 | WP_237080200.1 | Leu/Phe/Val dehydrogenase | - |
| BHS07_RS05490 (BHS07_05395) | - | 1280010..1280702 (+) | 693 | WP_140787946.1 | phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 17769.48 Da Isoelectric Point: 5.7963
>NTDB_id=196282 BHS07_RS05470 WP_140787940.1 1276357..1276863(+) (ssb) [Myxococcus xanthus strain KF4.3.9c1]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGG
NGDDDIPF
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGG
NGDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=196282 BHS07_RS05470 WP_140787940.1 1276357..1276863(+) (ssb) [Myxococcus xanthus strain KF4.3.9c1]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGGGGCCGTGACGCCGGAGACGGCATGGGTGGTGGCGGGGGCGGGGGCGGGGGCGGTGGACGCCGGCAGT
TCTCCCAGCCGCGCGGGGGAGACAACAATGACTATGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGC
AACGGCGACGACGACATCCCCTTCTAG
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGGGGCCGTGACGCCGGAGACGGCATGGGTGGTGGCGGGGGCGGGGGCGGGGGCGGTGGACGCCGGCAGT
TCTCCCAGCCGCGCGGGGGAGACAACAATGACTATGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGC
AACGGCGACGACGACATCCCCTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.541 |
100 |
0.518 |
| ssb | Glaesserella parasuis strain SC1401 |
41.989 |
100 |
0.452 |
| ssb | Neisseria gonorrhoeae MS11 |
41.111 |
100 |
0.44 |
| ssb | Neisseria meningitidis MC58 |
41.477 |
100 |
0.435 |