Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BHS06_RS05240 | Genome accession | NZ_CP017171 |
| Coordinates | 1237987..1238484 (+) | Length | 165 a.a. |
| NCBI ID | WP_011551191.1 | Uniprot ID | Q1DDE2 |
| Organism | Myxococcus xanthus strain KF3.2.8c11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1232987..1243484
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BHS06_RS05220 (BHS06_05120) | - | 1233546..1234007 (+) | 462 | WP_140860832.1 | PTS sugar transporter subunit IIA | - |
| BHS06_RS05225 (BHS06_05125) | - | 1234041..1234886 (+) | 846 | WP_174256872.1 | hypothetical protein | - |
| BHS06_RS05230 (BHS06_05130) | dtd | 1234883..1235344 (-) | 462 | WP_140860836.1 | D-aminoacyl-tRNA deacylase | - |
| BHS06_RS05235 (BHS06_05135) | dacB | 1235530..1237776 (+) | 2247 | WP_140860838.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| BHS06_RS05240 (BHS06_05140) | ssb | 1237987..1238484 (+) | 498 | WP_011551191.1 | single-stranded DNA-binding protein | Machinery gene |
| BHS06_RS05245 (BHS06_05145) | - | 1238607..1239287 (-) | 681 | WP_140860840.1 | succinate dehydrogenase | - |
| BHS06_RS05250 (BHS06_05150) | - | 1239550..1240434 (+) | 885 | WP_140860842.1 | Hsp33 family molecular chaperone HslO | - |
| BHS06_RS05255 (BHS06_05155) | - | 1240457..1241500 (+) | 1044 | WP_237079187.1 | Leu/Phe/Val dehydrogenase | - |
| BHS06_RS05260 (BHS06_05160) | - | 1241563..1242306 (+) | 744 | WP_140860844.1 | phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 17629.34 Da Isoelectric Point: 5.7963
>NTDB_id=196270 BHS06_RS05240 WP_011551191.1 1237987..1238484(+) (ssb) [Myxococcus xanthus strain KF3.2.8c11]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGRRQFSQQRGGDNNDYGQPPPDDMGGGHGGGNGD
DDIPF
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGRRQFSQQRGGDNNDYGQPPPDDMGGGHGGGNGD
DDIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=196270 BHS06_RS05240 WP_011551191.1 1237987..1238484(+) (ssb) [Myxococcus xanthus strain KF3.2.8c11]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGTGGCCGTGACGCCGGAGACGGCATGGGCGGCGGGGGCGGGGGCGGTGGACGCCGACAGTTCTCCCAGC
AGCGTGGGGGAGACAACAACGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCAACGGCGAC
GACGACATCCCCTTCTAG
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGTGGCCGTGACGCCGGAGACGGCATGGGCGGCGGGGGCGGGGGCGGTGGACGCCGACAGTTCTCCCAGC
AGCGTGGGGGAGACAACAACGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCAACGGCGAC
GACGACATCCCCTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.253 |
100 |
0.521 |
| ssb | Glaesserella parasuis strain SC1401 |
41.989 |
100 |
0.461 |
| ssb | Neisseria meningitidis MC58 |
42.197 |
100 |
0.442 |
| ssb | Neisseria gonorrhoeae MS11 |
42.197 |
100 |
0.442 |