Detailed information NTG0196263

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CCZ24_RS10380
• Genome accession: NZ_CP021773
• Coordinates: 2015476..2016474 (-)
• Length: 332 a.a.
• NCBI ID: WP_001873969.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain B105
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2010476..2021474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCZ24_RS10365 (CCZ24_10225)	-	2012725..2014503 (-)	1779	WP_001220913.1	acyltransferase family protein	-
CCZ24_RS10370 (CCZ24_10230)	-	2014500..2014880 (-)	381	WP_000787702.1	membrane protein	-
CCZ24_RS10375 (CCZ24_10235)	-	2014887..2015324 (-)	438	WP_000754819.1	low molecular weight protein-tyrosine-phosphatase	-
CCZ24_RS10380 (CCZ24_10240)	ruvB	2015476..2016474 (-)	999	WP_001873969.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CCZ24_RS10385 (CCZ24_10245)	comR	2016771..2017682 (-)	912	WP_000912100.1	helix-turn-helix domain-containing protein	Regulator
CCZ24_RS10390 (CCZ24_10250)	purB	2017835..2019133 (-)	1299	WP_000625675.1	adenylosuccinate lyase	-
CCZ24_RS10395 (CCZ24_10255)	-	2019151..2019996 (-)	846	WP_000613836.1	hypothetical protein	-
CCZ24_RS10400 (CCZ24_10260)	-	2020128..2021372 (-)	1245	WP_000522367.1	DUF4041 domain-containing protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37603.92 Da
• Isoelectric Point: 4.5053

>NTDB_id=196263 CCZ24_RS10380 WP_001873969.1 2015476..2016474(-) (ruvB) [Streptococcus agalactiae strain B105]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNITEERDTVEDMYEPYLIQKGFIMRTRTGRVATDK
AYEHLGYQRFDK

Nucleotide

• Length: 999 bp

>NTDB_id=196263 CCZ24_RS10380 WP_001873969.1 2015476..2016474(-) (ruvB) [Streptococcus agalactiae strain B105]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTCTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATTTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAACGATTTGAC
AGAAATTATTGAGCGTACAGCAGATATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTACTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG
GCATACGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.759	100	0.898
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.819	99.699	0.596
ruvB	Helicobacter pylori 26695	53.074	93.072	0.494
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476