Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BHS04_RS05570 Genome accession   NZ_CP017169
Coordinates   1289211..1289717 (+) Length   168 a.a.
NCBI ID   WP_140787940.1    Uniprot ID   A0AAE6KQR6
Organism   Myxococcus xanthus strain GH3.5.6c2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1284211..1294717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS04_RS05550 (BHS04_05385) - 1284770..1285231 (+) 462 WP_090485059.1 PTS sugar transporter subunit IIA -
  BHS04_RS05555 (BHS04_05390) - 1285265..1286110 (+) 846 WP_140853168.1 hypothetical protein -
  BHS04_RS05560 (BHS04_05395) dtd 1286107..1286568 (-) 462 WP_140787937.1 D-aminoacyl-tRNA deacylase -
  BHS04_RS05565 (BHS04_05400) dacB 1286754..1289000 (+) 2247 WP_140787939.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  BHS04_RS05570 (BHS04_05405) ssb 1289211..1289717 (+) 507 WP_140787940.1 single-stranded DNA-binding protein Machinery gene
  BHS04_RS05575 (BHS04_05410) - 1289840..1290520 (-) 681 WP_140787942.1 succinate dehydrogenase -
  BHS04_RS05580 (BHS04_05415) - 1290783..1291667 (+) 885 WP_140797386.1 Hsp33 family molecular chaperone HslO -
  BHS04_RS05585 (BHS04_05420) - 1291702..1292733 (+) 1032 WP_140787945.1 Leu/Phe/Val dehydrogenase -
  BHS04_RS05590 (BHS04_05425) - 1292864..1293556 (+) 693 WP_140797387.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17769.48 Da        Isoelectric Point: 5.7963

>NTDB_id=196246 BHS04_RS05570 WP_140787940.1 1289211..1289717(+) (ssb) [Myxococcus xanthus strain GH3.5.6c2]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGG
NGDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=196246 BHS04_RS05570 WP_140787940.1 1289211..1289717(+) (ssb) [Myxococcus xanthus strain GH3.5.6c2]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGGGGCCGTGACGCCGGAGACGGCATGGGTGGTGGCGGGGGCGGGGGCGGGGGCGGTGGACGCCGGCAGT
TCTCCCAGCCGCGCGGGGGAGACAACAATGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGC
AACGGCGACGACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.541

100

0.518
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.452
  ssb Neisseria gonorrhoeae MS11

41.111

100

0.44
  ssb Neisseria meningitidis MC58

41.477

100

0.435

Multiple sequence alignment