NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	CDH81_RS07510	Genome accession	NZ_CP021772
Coordinates	1463420..1464418 (+)	Length	332 a.a.
NCBI ID	WP_000196633.1	Uniprot ID	Q3K3X8
Organism	Streptococcus agalactiae strain B111
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1458420..1469418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDH81_RS07495 (CDH81_07415)	-	1459345..1460736 (+)	1392	WP_001079802.1	hypothetical protein	-
CDH81_RS07500 (CDH81_07420)	purB	1460761..1462059 (+)	1299	WP_000572887.1	adenylosuccinate lyase	-
CDH81_RS07505 (CDH81_07425)	comR	1462212..1463123 (+)	912	WP_000912100.1	helix-turn-helix domain-containing protein	Regulator
CDH81_RS07510 (CDH81_07430)	ruvB	1463420..1464418 (+)	999	WP_000196633.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CDH81_RS07515 (CDH81_07435)	-	1464570..1465007 (+)	438	WP_000754813.1	low molecular weight protein-tyrosine-phosphatase	-
CDH81_RS07520 (CDH81_07440)	-	1465014..1465394 (+)	381	WP_000787700.1	membrane protein	-
CDH81_RS07525 (CDH81_07445)	-	1465391..1467169 (+)	1779	WP_001220909.1	acyltransferase family protein	-

Sequence

Protein

Download Length: 332 a.a. Molecular weight: 37573.90 Da Isoelectric Point: 4.5053

                                >NTDB_id=196135 CDH81_RS07510 WP_000196633.1 1463420..1464418(+) (ruvB) [Streptococcus agalactiae strain B111]

MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL

KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR

AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID

DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATDK

AYEHLGYQRFDK

Nucleotide

Download Length: 999 bp

                                >NTDB_id=196135 CDH81_RS07510 WP_000196633.1 1463420..1464418(+) (ruvB) [Streptococcus agalactiae strain B111]

ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA

GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC

ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC

AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT

TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTCTATATTGACA

TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATCTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT

GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAATGATTTGAC

AGAAATTATTGAGCGTACAGCAGACATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC

GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT

GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG

AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTGCTGAAGAACGAGATACTG

TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG

GCATATGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q3K3X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Streptococcus pneumoniae TIGR4	90.06	100	0.901
ruvB	Streptococcus pneumoniae R6	89.759	100	0.898
ruvB	Streptococcus pneumoniae D39	89.759	100	0.898
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.819	99.699	0.596
ruvB	Helicobacter pylori 26695	53.074	93.072	0.494
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476

Detailed information NTG0196135