Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DU202_RS19485 Genome accession   NZ_CP017152
Coordinates   3963993..3964574 (-) Length   193 a.a.
NCBI ID   WP_001215083.1    Uniprot ID   -
Organism   Acinetobacter baumannii DU202     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3958993..3969574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DU202_RS19460 (DU202_03940) - 3959012..3960511 (+) 1500 WP_001257169.1 PLP-dependent aminotransferase family protein -
  DU202_RS19465 (DU202_03941) - 3960572..3962014 (-) 1443 WP_000718865.1 amino acid permease -
  DU202_RS19470 (DU202_03942) - 3962320..3962868 (-) 549 WP_000081861.1 helix-turn-helix domain-containing protein -
  DU202_RS19475 (DU202_03943) - 3962937..3963632 (+) 696 WP_000415575.1 AzlC family ABC transporter permease -
  DU202_RS19480 (DU202_03944) - 3963629..3963952 (+) 324 WP_000082711.1 AzlD domain-containing protein -
  DU202_RS19485 (DU202_03945) ssb 3963993..3964574 (-) 582 WP_001215083.1 single-stranded DNA-binding protein Machinery gene
  DU202_RS19490 (DU202_03946) - 3964626..3965990 (-) 1365 WP_000980460.1 MFS transporter -
  DU202_RS19495 (DU202_03947) - 3966137..3967219 (-) 1083 WP_000680213.1 DUF475 domain-containing protein -
  DU202_RS19500 (DU202_03948) tenA 3967482..3968156 (+) 675 WP_000899418.1 thiaminase II -
  DU202_RS19505 (DU202_03949) - 3968206..3968547 (-) 342 WP_000263326.1 GlpM family protein -
  DU202_RS19510 (DU202_03950) - 3968600..3968953 (-) 354 WP_000580161.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=196121 DU202_RS19485 WP_001215083.1 3963993..3964574(-) (ssb) [Acinetobacter baumannii DU202]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGSGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=196121 DU202_RS19485 WP_001215083.1 3963993..3964574(-) (ssb) [Acinetobacter baumannii DU202]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTAGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394

Multiple sequence alignment