Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DU202_RS18875 Genome accession   NZ_CP017152
Coordinates   3843172..3843990 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii DU202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3838172..3848990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DU202_RS18860 (DU202_03816) pilE 3838390..3838815 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  DU202_RS18865 (DU202_03817) pilY2 3838812..3839294 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  DU202_RS18870 - 3839307..3843160 (-) 3854 Protein_3725 PilC/PilY family type IV pilus protein -
  DU202_RS18875 (DU202_03820) pilX 3843172..3843990 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DU202_RS18880 (DU202_03821) pilW 3843987..3844988 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  DU202_RS18885 (DU202_03822) pilV 3844989..3845549 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  DU202_RS18890 (DU202_03823) fimU 3845543..3846016 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  DU202_RS18895 (DU202_03824) ispH 3846186..3847136 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DU202_RS18900 (DU202_03825) gmk 3847259..3847888 (+) 630 WP_000015937.1 guanylate kinase -
  DU202_RS18905 (DU202_03826) rpoZ 3847961..3848239 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DU202_RS21265 - 3848278..3848407 (+) 130 Protein_3733 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=196111 DU202_RS18875 WP_000149374.1 3843172..3843990(-) (pilX) [Acinetobacter baumannii DU202]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=196111 DU202_RS18875 WP_000149374.1 3843172..3843990(-) (pilX) [Acinetobacter baumannii DU202]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment