Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DU202_RS18860 Genome accession   NZ_CP017152
Coordinates   3838390..3838815 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii DU202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3833390..3843815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DU202_RS18830 (DU202_03810) - 3833918..3834952 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  DU202_RS18835 (DU202_03811) - 3835067..3836008 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  DU202_RS18840 (DU202_03812) rplS 3836061..3836429 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  DU202_RS18845 (DU202_03813) trmD 3836638..3837378 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DU202_RS18850 (DU202_03814) rimM 3837424..3837972 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  DU202_RS18855 (DU202_03815) rpsP 3837992..3838243 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  DU202_RS18860 (DU202_03816) pilE 3838390..3838815 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  DU202_RS18865 (DU202_03817) pilY2 3838812..3839294 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  DU202_RS18870 - 3839307..3843160 (-) 3854 Protein_3725 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=196109 DU202_RS18860 WP_000788342.1 3838390..3838815(-) (pilE) [Acinetobacter baumannii DU202]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=196109 DU202_RS18860 WP_000788342.1 3838390..3838815(-) (pilE) [Acinetobacter baumannii DU202]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment