Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   DU202_RS18890 Genome accession   NZ_CP017152
Coordinates   3845543..3846016 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii DU202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3840543..3851016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DU202_RS18875 (DU202_03820) pilX 3843172..3843990 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DU202_RS18880 (DU202_03821) pilW 3843987..3844988 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  DU202_RS18885 (DU202_03822) pilV 3844989..3845549 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  DU202_RS18890 (DU202_03823) fimU 3845543..3846016 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  DU202_RS18895 (DU202_03824) ispH 3846186..3847136 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DU202_RS18900 (DU202_03825) gmk 3847259..3847888 (+) 630 WP_000015937.1 guanylate kinase -
  DU202_RS18905 (DU202_03826) rpoZ 3847961..3848239 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DU202_RS21265 - 3848278..3848407 (+) 130 Protein_3733 hypothetical protein -
  DU202_RS18910 (DU202_03827) - 3848447..3850552 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=196114 DU202_RS18890 WP_001214061.1 3845543..3846016(-) (fimU) [Acinetobacter baumannii DU202]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=196114 DU202_RS18890 WP_001214061.1 3845543..3846016(-) (fimU) [Acinetobacter baumannii DU202]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment