Detailed information NTG0196094

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: DU202_RS04610
• Genome accession: NZ_CP017152
• Coordinates: 962525..963643 (-)
• Length: 372 a.a.
• NCBI ID: WP_000347039.1
• Uniprot ID: A0A9P2XLL8
• Organism: Acinetobacter baumannii DU202
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 957525..968643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DU202_RS04575 (DU202_00920)	-	958006..958935 (+)	930	WP_001091151.1	IS5-like element ISAba10 family transposase	-
DU202_RS04580 (DU202_00921)	-	958990..959202 (+)	213	Protein_882	class II glutamine amidotransferase	-
DU202_RS04585 (DU202_00922)	-	959455..959910 (+)	456	WP_000782976.1	bacteriohemerythrin	-
DU202_RS04590 (DU202_00923)	-	960063..961130 (+)	1068	WP_002019572.1	hypothetical protein	-
DU202_RS04595 (DU202_00924)	-	961130..961453 (+)	324	WP_000442587.1	RnfH family protein	-
DU202_RS04600 (DU202_00925)	-	961508..961906 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
DU202_RS04605 (DU202_00926)	fur	962018..962455 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
DU202_RS04610 (DU202_00927)	pilU	962525..963643 (-)	1119	WP_000347039.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
DU202_RS04615 (DU202_00928)	pilT	963671..964708 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
DU202_RS04620 (DU202_00929)	-	964835..965527 (+)	693	WP_001108512.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41933.13 Da
• Isoelectric Point: 6.6944

>NTDB_id=196094 DU202_RS04610 WP_000347039.1 962525..963643(-) (pilU) [Acinetobacter baumannii DU202]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=196094 DU202_RS04610 WP_000347039.1 962525..963643(-) (pilU) [Acinetobacter baumannii DU202]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTTGTAGGCGCGACAG
GCACAGGTAAATCTACTTCACTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (31-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.926	100	0.772
pilU	Pseudomonas stutzeri DSM 10701	69.565	98.925	0.688
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.486	93.011	0.395