Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH84_RS04605 Genome accession   NZ_CP021771
Coordinates   898249..898929 (-) Length   226 a.a.
NCBI ID   WP_000274752.1    Uniprot ID   Q8E564
Organism   Streptococcus agalactiae strain B507     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 893249..903929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH84_RS04575 (CDH84_04525) - 893471..894142 (-) 672 WP_000061344.1 GTP pyrophosphokinase family protein -
  CDH84_RS04580 (CDH84_04530) - 894252..894824 (+) 573 WP_000149079.1 CYTH domain-containing protein -
  CDH84_RS04585 (CDH84_04535) - 895001..895975 (+) 975 WP_000840698.1 ribose-phosphate diphosphokinase -
  CDH84_RS04590 (CDH84_04540) - 895979..897094 (+) 1116 WP_000639603.1 aminotransferase class V-fold PLP-dependent enzyme -
  CDH84_RS04595 (CDH84_04545) - 897096..897443 (+) 348 WP_000863501.1 DUF1831 domain-containing protein -
  CDH84_RS04600 (CDH84_04550) - 897598..898236 (+) 639 WP_000605176.1 redox-sensing transcriptional repressor Rex -
  CDH84_RS04605 (CDH84_04555) radC 898249..898929 (-) 681 WP_000274752.1 DNA repair protein RadC Machinery gene
  CDH84_RS04610 (CDH84_04560) - 899025..900158 (-) 1134 WP_000667241.1 AI-2E family transporter -
  CDH84_RS04615 (CDH84_04565) - 900249..901688 (-) 1440 WP_000989485.1 6-phospho-beta-glucosidase -
  CDH84_RS04620 (CDH84_04570) - 901848..902462 (-) 615 WP_000895129.1 SGNH/GDSL hydrolase family protein -
  CDH84_RS04625 (CDH84_04575) - 902563..903384 (-) 822 WP_000598505.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25827.08 Da        Isoelectric Point: 8.2797

>NTDB_id=196014 CDH84_RS04605 WP_000274752.1 898249..898929(-) (radC) [Streptococcus agalactiae strain B507]
MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKGIGQVKS
VEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRTIFIGTVRRSVAEPREILH
YACKNMATSLIIIHNHPSGSPNPSESDLSFTKKIKRSCDHLGIVCLDHIIVGKNKYYSFREEADIL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=196014 CDH84_RS04605 WP_000274752.1 898249..898929(-) (radC) [Streptococcus agalactiae strain B507]
ATGTACCATATTGAATTAAAAAAGGAAGCTTTACTACCAAGAGAACGCCTAGTTGATTTAGGCGCAGATAGATTGAGTAA
TCAGGAGTTATTAGCCATTCTCTTACGTACAGGTATTAAAGAAAAACCTGTTCTTGAAATTTCAACGCAAATTTTAGAAA
ACATAAGCAGTTTAGCAGATTTTGGTCAATTATCCTTACAGGAGTTGCAATCCATTAAAGGAATCGGTCAGGTTAAATCC
GTCGAAATAAAAGCTATGCTAGAACTAGCAAAACGGATTCACAAAGCTGAATATGATCGTAAAGAGCAAATTTTAAGTAG
TGAACAATTAGCGAGGAAAATGATGCTCGAATTAGGGGATAAAAAACAAGAACATTTAGTAGCTATTTATATGGATACAC
AAAATCGTATTATCGAACAGAGAACTATTTTTATTGGTACTGTACGTCGTTCAGTAGCAGAGCCAAGAGAAATTCTACAT
TATGCTTGTAAAAACATGGCAACTTCTTTGATTATTATACATAATCATCCCTCAGGTTCTCCAAATCCCAGTGAAAGTGA
TTTAAGTTTCACTAAAAAAATAAAACGATCATGTGATCATCTGGGAATTGTCTGCCTAGATCACATCATCGTTGGAAAAA
ATAAATATTATAGTTTTCGAGAAGAAGCAGATATTTTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(12-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E564

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  radC Streptococcus gordonii str. Challis substr. CH1

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.654

93.363

0.398

Multiple sequence alignment