Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   BFP66_RS00685 Genome accession   NZ_CP017142
Coordinates   102066..102359 (+) Length   97 a.a.
NCBI ID   WP_024390433.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97066..107359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS00655 (BFP66_00655) - 98088..98453 (+) 366 WP_024417409.1 DUF1033 family protein -
  BFP66_RS00660 (BFP66_00660) - 98488..99438 (-) 951 WP_024417410.1 S66 peptidase family protein -
  BFP66_RS00665 (BFP66_00665) comYA 99524..100474 (+) 951 WP_024417411.1 competence type IV pilus ATPase ComGA Machinery gene
  BFP66_RS00670 (BFP66_00670) comYB 100386..101423 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  BFP66_RS00675 (BFP66_00675) comYC 101425..101706 (+) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  BFP66_RS00680 (BFP66_00680) comGD 101687..102094 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD -
  BFP66_RS00685 (BFP66_00685) comYE 102066..102359 (+) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  BFP66_RS00690 (BFP66_00690) comGF/cglF 102346..102780 (+) 435 WP_063725150.1 competence type IV pilus minor pilin ComGF Machinery gene
  BFP66_RS00695 (BFP66_00695) comGG 102758..103168 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  BFP66_RS00700 (BFP66_00700) comYH 103225..104178 (+) 954 WP_024409299.1 class I SAM-dependent methyltransferase Machinery gene
  BFP66_RS00705 (BFP66_00705) - 104228..105415 (+) 1188 WP_014637319.1 acetate kinase -
  BFP66_RS00710 (BFP66_00710) - 105730..106281 (+) 552 WP_024417413.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.72 Da        Isoelectric Point: 9.6566

>NTDB_id=195938 BFP66_RS00685 WP_024390433.1 102066..102359(+) (comYE) [Streptococcus suis strain GZ0565]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDVGRRRQAWELEQQEVLNLAQMAVQTGQDKLALNGVTVQVQQTAD
KIIVFYEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=195938 BFP66_RS00685 WP_024390433.1 102066..102359(+) (comYE) [Streptococcus suis strain GZ0565]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGTAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAAGCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACAAACAGCGGAT
AAGATCATTGTTTTCTACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae D39

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae R6

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae TIGR4

43.158

97.938

0.423
  comGE/cglE Streptococcus mitis SK321

42.105

97.938

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

42.105

97.938

0.412
  comGE Lactococcus lactis subsp. cremoris KW2

38.043

94.845

0.361

Multiple sequence alignment