Detailed information NTG0195744

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: BG023_RS14080
• Genome accession: NZ_CP017113
• Coordinates: 2934031..2934570 (-)
• Length: 179 a.a.
• NCBI ID: WP_069310990.1
• Uniprot ID: A0A1D7NPR5
• Organism: Porphyrobacter sp. LM 6
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2929031..2939570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BG023_RS14045 (BG023_112854)	-	2929636..2930763 (-)	1128	WP_069310984.1	acyltransferase	-
BG023_RS14050 (BG023_112855)	hslV	2930780..2931337 (-)	558	WP_069310985.1	ATP-dependent protease subunit HslV	-
BG023_RS14055 (BG023_112856)	-	2931378..2931875 (-)	498	WP_069310986.1	outer membrane protein assembly factor BamE	-
BG023_RS14060 (BG023_112857)	-	2932114..2932641 (+)	528	WP_069310987.1	ubiquinol-cytochrome C chaperone family protein	-
BG023_RS14065 (BG023_112858)	-	2932638..2933177 (+)	540	WP_150122893.1	DUF177 domain-containing protein	-
BG023_RS14070 (BG023_112859)	-	2933283..2933486 (-)	204	WP_069310988.1	helix-turn-helix transcriptional regulator	-
BG023_RS14075 (BG023_112860)	-	2933483..2933881 (-)	399	WP_150122894.1	hypothetical protein	-
BG023_RS14080 (BG023_112861)	ssb	2934031..2934570 (-)	540	WP_069310990.1	single-stranded DNA-binding protein	Machinery gene
BG023_RS14085 (BG023_112862)	-	2934681..2935343 (-)	663	WP_069310991.1	COQ9 family protein	-
BG023_RS14090 (BG023_112863)	-	2935345..2936004 (-)	660	WP_233993025.1	ankyrin repeat domain-containing protein	-
BG023_RS14095 (BG023_112864)	-	2936079..2936684 (+)	606	WP_069310993.1	SCO family protein	-
BG023_RS14620	-	2936672..2937103 (+)	432	Protein_2819	YcgN family cysteine cluster protein	-
BG023_RS14100 (BG023_112865)	-	2937150..2937872 (+)	723	WP_069310994.1	SprT family zinc-dependent metalloprotease	-
BG023_RS14105 (BG023_112866)	-	2937918..2938379 (+)	462	WP_069310995.1	hypothetical protein	-
BG023_RS14110 (BG023_112867)	ribD	2938376..2939362 (+)	987	WP_335673852.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

• Length: 179 a.a.
• Molecular weight: 18125.78 Da
• Isoelectric Point: 4.9561

>NTDB_id=195744 BG023_RS14080 WP_069310990.1 2934031..2934570(-) (ssb) [Porphyrobacter sp. LM 6]
MAGSLNKVMLIGNLGADPEVRTFQNGGKVCNLRIATSETWKDRNTGEKQERTEWHTVAIFNEGLAGVAERFLKKGSKVYI
EGQLQTRKWQDQQGNDRYSTEVVLRGPNSVMTMLDGGGGGGSGMGGGGAGRSGGGSYGGGGGGGGGWDQGGGSSGGSGGG
FGGGAPAGGYDDLDDDIPF

Nucleotide

• Length: 540 bp

>NTDB_id=195744 BG023_RS14080 WP_069310990.1 2934031..2934570(-) (ssb) [Porphyrobacter sp. LM 6]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTCGGGGCCGATCCCGAAGTGCGGACGTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGGATCGCCACCAGCGAAACCTGGAAGGATCGCAACACCGGCGAAAAGCAGGAACGCACCGAAT
GGCACACCGTGGCGATCTTCAACGAAGGTCTGGCGGGCGTTGCCGAGCGCTTCCTCAAGAAAGGCAGCAAGGTCTACATT
GAAGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGCAGGGCAATGACCGCTACTCGACCGAAGTCGTGCTGCGCGGCCC
GAACTCGGTGATGACCATGCTTGATGGCGGTGGCGGTGGCGGTAGCGGCATGGGCGGCGGCGGTGCCGGCCGCTCAGGCG
GCGGCAGCTACGGCGGCGGCGGTGGTGGTGGCGGTGGCTGGGATCAGGGCGGCGGTTCGTCGGGCGGCTCGGGCGGCGGC
TTTGGCGGCGGCGCTCCGGCTGGCGGCTACGACGATCTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (5-105)

3D structure

• AlphaFold DB: A0A1D7NPR5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	50.568	98.324	0.497
ssb	Glaesserella parasuis strain SC1401	43.069	100	0.486
ssb	Neisseria meningitidis MC58	40.984	100	0.419
ssb	Neisseria gonorrhoeae MS11	40.437	100	0.413