Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BS16045_RS21645 Genome accession   NZ_CP017112
Coordinates   4148082..4148600 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain BS16045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4143082..4153600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS21615 (BS16045_04286) yyaJ 4143586..4144941 (+) 1356 WP_029318525.1 MFS transporter -
  BS16045_RS21620 (BS16045_04287) maa 4144975..4145529 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  BS16045_RS21625 (BS16045_04288) yyaH 4145547..4145927 (-) 381 WP_029318524.1 VOC family protein -
  BS16045_RS21630 (BS16045_04289) ccpB 4145983..4146918 (-) 936 WP_029318523.1 transcriptional regulator CcpB -
  BS16045_RS21635 (BS16045_04290) xth 4146977..4147735 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  BS16045_RS21640 (BS16045_04291) rpsR 4147799..4148038 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BS16045_RS21645 (BS16045_04292) ssbA 4148082..4148600 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BS16045_RS21650 (BS16045_04293) rpsF 4148641..4148928 (-) 288 WP_029318521.1 30S ribosomal protein S6 -
  BS16045_RS21655 (BS16045_04294) ychF 4149039..4150139 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BS16045_RS21660 (BS16045_04295) yyaE 4150266..4152269 (-) 2004 WP_069323041.1 molybdopterin-dependent oxidoreductase -
  BS16045_RS21665 (BS16045_04296) yyzM 4152320..4152526 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=195737 BS16045_RS21645 WP_003219228.1 4148082..4148600(-) (ssbA) [Bacillus subtilis strain BS16045]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=195737 BS16045_RS21645 WP_003219228.1 4148082..4148600(-) (ssbA) [Bacillus subtilis strain BS16045]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment