Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   A7J08_RS07770 Genome accession   NZ_CP017088
Coordinates   1560826..1561470 (+) Length   214 a.a.
NCBI ID   WP_002942854.1    Uniprot ID   A0A0M9FM24
Organism   Streptococcus suis strain SRD478     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555826..1566470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS07740 (A7J08_07530) xerA 1556054..1557040 (-) 987 WP_148115832.1 site-specific tyrosine recombinase/integron integrase -
  A7J08_RS07745 (A7J08_07535) - 1557082..1557711 (+) 630 WP_148115833.1 restriction endonuclease subunit S -
  A7J08_RS07750 (A7J08_07540) - 1557696..1558253 (-) 558 WP_044684671.1 restriction endonuclease subunit S -
  A7J08_RS07755 (A7J08_07545) - 1558243..1559748 (-) 1506 WP_105242895.1 class I SAM-dependent DNA methyltransferase -
  A7J08_RS07765 (A7J08_07550) - 1560139..1560693 (-) 555 WP_148115834.1 class I SAM-dependent methyltransferase -
  A7J08_RS07770 (A7J08_07555) cclA/cilC 1560826..1561470 (+) 645 WP_002942854.1 A24 family peptidase Machinery gene
  A7J08_RS07775 (A7J08_07560) - 1561578..1563038 (+) 1461 WP_044684097.1 nicotinate phosphoribosyltransferase -
  A7J08_RS07780 (A7J08_07565) nadE 1563051..1563875 (+) 825 WP_024382384.1 ammonia-dependent NAD(+) synthetase -
  A7J08_RS07790 (A7J08_07570) - 1565114..1565641 (-) 528 WP_053867189.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24144.21 Da        Isoelectric Point: 8.4760

>NTDB_id=195411 A7J08_RS07770 WP_002942854.1 1560826..1561470(+) (cclA/cilC) [Streptococcus suis strain SRD478]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEVLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQVSIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=195411 A7J08_RS07770 WP_002942854.1 1560826..1561470(+) (cclA/cilC) [Streptococcus suis strain SRD478]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCCAGTCACTGCAATGCCTGCAAGCGACGACTCAAGGCCTGGGACCTAATACCCATCCTGTCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAAGTCTTAGCTGGT
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTAACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAGTCAGTATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M9FM24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.528

99.065

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae D39

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae R6

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

47.17

99.065

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449

Multiple sequence alignment