Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   A7J08_RS03850 Genome accession   NZ_CP017088
Coordinates   761746..762687 (+) Length   313 a.a.
NCBI ID   WP_148115693.1    Uniprot ID   A0A3Q8BEV0
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 756746..767687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS03830 (A7J08_03695) - 757594..758631 (-) 1038 WP_053867114.1 3-deoxy-7-phosphoheptulonate synthase -
  A7J08_RS03840 (A7J08_03700) - 758931..759524 (-) 594 WP_002938116.1 DUF1361 domain-containing protein -
  A7J08_RS03845 (A7J08_03705) metG 759679..761682 (+) 2004 WP_105159967.1 methionine--tRNA ligase -
  A7J08_RS03850 (A7J08_03710) coiA 761746..762687 (+) 942 WP_148115693.1 competence protein CoiA family protein Machinery gene
  A7J08_RS03855 (A7J08_03715) pepF 762918..764720 (+) 1803 WP_148115694.1 oligoendopeptidase F Regulator
  A7J08_RS03860 (A7J08_03720) - 764722..765162 (+) 441 WP_044758942.1 hypothetical protein -
  A7J08_RS03865 (A7J08_03725) - 765178..765726 (+) 549 WP_002938103.1 DUF6630 family protein -
  A7J08_RS03870 (A7J08_03730) - 765801..766520 (+) 720 WP_074390279.1 O-methyltransferase -
  A7J08_RS03875 (A7J08_03735) prsA 766581..767582 (+) 1002 WP_136646868.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36252.87 Da        Isoelectric Point: 7.8478

>NTDB_id=195399 A7J08_RS03850 WP_148115693.1 761746..762687(+) (coiA) [Streptococcus suis strain SRD478]
MLVALDEDGQVFNVLENPAPQGRFCCPGCGGQVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=195399 A7J08_RS03850 WP_148115693.1 761746..762687(+) (coiA) [Streptococcus suis strain SRD478]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTTTTGCTGTCC
AGGTTGTGGAGGACAGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACGTAACCCTGCGGGACTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCCCTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTATCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8BEV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.282

99.681

0.511
  coiA Streptococcus pneumoniae Rx1

51.282

99.681

0.511
  coiA Streptococcus pneumoniae D39

51.282

99.681

0.511
  coiA Streptococcus pneumoniae R6

51.282

99.681

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428

Multiple sequence alignment