Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABE28_RS23725 Genome accession   NZ_CP017080
Coordinates   4891057..4891587 (-) Length   176 a.a.
NCBI ID   WP_061141436.1    Uniprot ID   A0A2M9P1C9
Organism   Peribacillus muralis strain G25-68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4886057..4896587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS23705 (ABE28_023705) rplI 4887117..4887566 (-) 450 WP_064466965.1 50S ribosomal protein L9 -
  ABE28_RS23710 (ABE28_023710) - 4887563..4889533 (-) 1971 WP_064466964.1 DHH family phosphoesterase -
  ABE28_RS23715 (ABE28_023715) - 4889572..4890519 (-) 948 WP_064466963.1 YybS family protein -
  ABE28_RS23720 (ABE28_023720) rpsR 4890770..4891009 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  ABE28_RS23725 (ABE28_023725) ssbA 4891057..4891587 (-) 531 WP_061141436.1 single-stranded DNA-binding protein Machinery gene
  ABE28_RS23730 (ABE28_023730) rpsF 4891655..4891939 (-) 285 WP_061141437.1 30S ribosomal protein S6 -
  ABE28_RS23735 (ABE28_023735) ychF 4892122..4893222 (-) 1101 WP_064466962.1 redox-regulated ATPase YchF -
  ABE28_RS23740 (ABE28_023740) - 4893387..4893584 (-) 198 WP_064466961.1 DUF951 domain-containing protein -
  ABE28_RS23745 (ABE28_023745) - 4893605..4894441 (-) 837 WP_064466960.1 mechanosensitive ion channel family protein -
  ABE28_RS23750 (ABE28_023750) yyaC 4894820..4895455 (+) 636 WP_064466959.1 spore protease YyaC -
  ABE28_RS23755 (ABE28_023755) - 4895593..4896294 (-) 702 WP_064466958.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19491.15 Da        Isoelectric Point: 4.8282

>NTDB_id=195311 ABE28_RS23725 WP_061141436.1 4891057..4891587(-) (ssbA) [Peribacillus muralis strain G25-68]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=195311 ABE28_RS23725 WP_061141436.1 4891057..4891587(-) (ssbA) [Peribacillus muralis strain G25-68]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTACCTGTAGC
CACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGTCAGGTGAACGTGAAGCAGATTTCATTAATTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAAGGCAGTTTGGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAGTTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAACAATAATAACGGAAATG
ACAATAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAGACCATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M9P1C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.274

100

0.705
  ssb Latilactobacillus sakei subsp. sakei 23K

56.18

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.227

0.381
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.381

Multiple sequence alignment