Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BG030_RS02740 Genome accession   NZ_CP017073
Coordinates   597976..598521 (+) Length   181 a.a.
NCBI ID   WP_071890656.1    Uniprot ID   -
Organism   Pseudomonas putida strain PP112420     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 592976..603521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG030_RS02725 (BG030_02655) bfr 593071..593535 (+) 465 WP_003257116.1 bacterioferritin -
  BG030_RS02730 (BG030_02660) uvrA 593608..596442 (-) 2835 WP_012270240.1 excinuclease ABC subunit UvrA -
  BG030_RS02735 (BG030_02665) - 596572..597966 (+) 1395 WP_012270241.1 MFS transporter -
  BG030_RS02740 (BG030_02670) ssb 597976..598521 (+) 546 WP_071890656.1 single-stranded DNA-binding protein Machinery gene
  BG030_RS02750 (BG030_02680) fdnG 598853..601921 (+) 3069 WP_148043788.1 formate dehydrogenase-N subunit alpha -
  BG030_RS02755 (BG030_02685) fdxH 601921..602871 (+) 951 WP_012270260.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20028.15 Da        Isoelectric Point: 5.9286

>NTDB_id=195233 BG030_RS02740 WP_071890656.1 597976..598521(+) (ssb) [Pseudomonas putida strain PP112420]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQPQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=195233 BG030_RS02740 WP_071890656.1 597976..598521(+) (ssb) [Pseudomonas putida strain PP112420]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGTCGTCCGCAGGGCCAGCCGCAGGGTGGTGACCCCTACAACCAGGGGGGTGGCAACTACGGTG
GCGGCCAACAGCAGCAGTACAACCAGGCTCCGCCTCGTCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCACAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492

Multiple sequence alignment