Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BGM23_RS09785 | Genome accession | NZ_CP017072 |
| Coordinates | 1859992..1860327 (-) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. FJAT-14266 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1854992..1865327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BGM23_RS09735 (BGM23_09735) | comGC | 1855010..1855306 (+) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
| BGM23_RS09740 (BGM23_09740) | comGD | 1855296..1855727 (+) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| BGM23_RS09745 (BGM23_09745) | comGE | 1855711..1856058 (+) | 348 | WP_014480255.1 | ComG operon protein 5 | Machinery gene |
| BGM23_RS09750 (BGM23_09750) | comGF | 1856084..1856467 (+) | 384 | WP_029726721.1 | ComG operon protein ComGF | Machinery gene |
| BGM23_RS09755 (BGM23_09755) | comGG | 1856468..1856842 (+) | 375 | WP_029726722.1 | ComG operon protein ComGG | Machinery gene |
| BGM23_RS09760 (BGM23_09760) | - | 1856914..1857093 (+) | 180 | WP_029726723.1 | YqzE family protein | - |
| BGM23_RS09765 (BGM23_09765) | - | 1857135..1857461 (-) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| BGM23_RS09770 (BGM23_09770) | tapA | 1857733..1858494 (+) | 762 | WP_029726724.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BGM23_RS09775 (BGM23_09775) | - | 1858478..1859050 (+) | 573 | WP_072692741.1 | signal peptidase I | - |
| BGM23_RS09780 (BGM23_09780) | tasA | 1859114..1859899 (+) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| BGM23_RS09785 (BGM23_09785) | sinR | 1859992..1860327 (-) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| BGM23_RS09790 (BGM23_09790) | sinI | 1860361..1860534 (-) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| BGM23_RS09795 (BGM23_09795) | - | 1860717..1861511 (-) | 795 | WP_015714249.1 | YqhG family protein | - |
| BGM23_RS09800 (BGM23_09800) | - | 1861532..1863205 (-) | 1674 | WP_029726726.1 | SNF2-related protein | - |
| BGM23_RS09805 (BGM23_09805) | gcvT | 1863646..1864734 (+) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=195190 BGM23_RS09785 WP_003226345.1 1859992..1860327(-) (sinR) [Bacillus sp. FJAT-14266]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=195190 BGM23_RS09785 WP_003226345.1 1859992..1860327(-) (sinR) [Bacillus sp. FJAT-14266]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |