Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   BGM23_RS09740 Genome accession   NZ_CP017072
Coordinates   1855296..1855727 (+) Length   143 a.a.
NCBI ID   WP_029726720.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1850296..1860727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS09710 (BGM23_09710) corA 1851537..1852490 (+) 954 WP_004399136.1 magnesium transporter CorA -
  BGM23_RS09715 (BGM23_09715) - 1852492..1852689 (+) 198 WP_029726717.1 hypothetical protein -
  BGM23_RS09725 (BGM23_09725) comGA 1852902..1853972 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  BGM23_RS09730 (BGM23_09730) comGB 1853959..1854996 (+) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  BGM23_RS09735 (BGM23_09735) comGC 1855010..1855306 (+) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  BGM23_RS09740 (BGM23_09740) comGD 1855296..1855727 (+) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  BGM23_RS09745 (BGM23_09745) comGE 1855711..1856058 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  BGM23_RS09750 (BGM23_09750) comGF 1856084..1856467 (+) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  BGM23_RS09755 (BGM23_09755) comGG 1856468..1856842 (+) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  BGM23_RS09760 (BGM23_09760) - 1856914..1857093 (+) 180 WP_029726723.1 YqzE family protein -
  BGM23_RS09765 (BGM23_09765) - 1857135..1857461 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  BGM23_RS09770 (BGM23_09770) tapA 1857733..1858494 (+) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  BGM23_RS09775 (BGM23_09775) - 1858478..1859050 (+) 573 WP_072692741.1 signal peptidase I -
  BGM23_RS09780 (BGM23_09780) tasA 1859114..1859899 (+) 786 WP_014664586.1 biofilm matrix protein TasA -
  BGM23_RS09785 (BGM23_09785) sinR 1859992..1860327 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BGM23_RS09790 (BGM23_09790) sinI 1860361..1860534 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16151.72 Da        Isoelectric Point: 9.9080

>NTDB_id=195186 BGM23_RS09740 WP_029726720.1 1855296..1855727(+) (comGD) [Bacillus sp. FJAT-14266]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQVAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=195186 BGM23_RS09740 WP_029726720.1 1855296..1855727(+) (comGD) [Bacillus sp. FJAT-14266]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGGTTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTATATGATATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

95.804

100

0.958

Multiple sequence alignment