Detailed information NTG0195085

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BFP67_RS06435
• Genome accession: NZ_CP017069
• Coordinates: 1324788..1327175 (+)
• Length: 795 a.a.
• NCBI ID: WP_002492901.1
• Uniprot ID: A0A853V584
• Organism: Staphylococcus lugdunensis strain K93G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1319788..1332175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFP67_RS12765 (BFP67_12455)	-	1320147..1320287 (+)	141	WP_002458939.1	SAS049 family protein	-
BFP67_RS06415 (BFP67_05095)	-	1320488..1321489 (-)	1002	WP_002458940.1	LLM class flavin-dependent oxidoreductase	-
BFP67_RS06420 (BFP67_05090)	-	1321719..1322861 (+)	1143	WP_002492915.1	cysteine desulfurase family protein	-
BFP67_RS06425 (BFP67_05085)	mnmA	1322861..1323973 (+)	1113	WP_002492894.1	tRNA 2-thiouridine(34) synthase MnmA	-
BFP67_RS06430 (BFP67_05080)	-	1324115..1324786 (+)	672	WP_002492893.1	tetratricopeptide repeat protein	-
BFP67_RS06435 (BFP67_05075)	recD2	1324788..1327175 (+)	2388	WP_002492901.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BFP67_RS06440 (BFP67_05070)	alaS	1327443..1330073 (+)	2631	WP_037540786.1	alanine--tRNA ligase	-
BFP67_RS06445 (BFP67_05065)	-	1330139..1330399 (+)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
BFP67_RS06450 (BFP67_05060)	ruvX	1330403..1330831 (+)	429	WP_002458947.1	Holliday junction resolvase RuvX	-
BFP67_RS06455 (BFP67_05055)	-	1330844..1331152 (+)	309	WP_002458948.1	DUF1292 domain-containing protein	-
BFP67_RS06460 (BFP67_05050)	-	1331514..1332155 (+)	642	WP_037540784.1	O-methyltransferase	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89602.38 Da
• Isoelectric Point: 4.8235

>NTDB_id=195085 BFP67_RS06435 WP_002492901.1 1324788..1327175(+) (recD2) [Staphylococcus lugdunensis strain K93G]
MDNPTLLEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IYLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPAETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSNDDNIIAKHKKVTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=195085 BFP67_RS06435 WP_002492901.1 1324788..1327175(+) (recD2) [Staphylococcus lugdunensis strain K93G]
ATGGATAACCCTACACTTCTTGAACCGACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAACGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATATACTTACATGATTTAGGGTTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTGCTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCCA
GTCTTTACTACTCAGAATTAAAAAGCGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAGGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTAACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTG
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAGATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCATAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAACCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGCCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTAATGATGATAATATCATAGCTAAACATAAAAAAGTTACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATCAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-544)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

3D structure

• AlphaFold DB: A0A853V584

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.063	100	0.503