Detailed information NTG0195085

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CCZ36_RS04230
• Genome accession: NZ_CP021707
• Coordinates: 954353..955438 (-)
• Length: 361 a.a.
• NCBI ID: WP_128817050.1
• Uniprot ID: -
• Organism: Streptomyces sp. S063
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 949353..960438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCZ36_RS04210	-	950135..950686 (-)	552	WP_069737359.1	adenine phosphoribosyltransferase	-
CCZ36_RS04215	secF	950690..951772 (-)	1083	WP_069737360.1	protein translocase subunit SecF	-
CCZ36_RS04220	secD	951774..953552 (-)	1779	WP_069737361.1	protein translocase subunit SecD	-
CCZ36_RS04225	yajC	953703..954185 (-)	483	WP_069737362.1	preprotein translocase subunit YajC	-
CCZ36_RS04230	ruvB	954353..955438 (-)	1086	WP_128817050.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CCZ36_RS04235	ruvA	955468..956094 (-)	627	WP_032780883.1	Holliday junction branch migration protein RuvA	-
CCZ36_RS04240	ruvC	956238..956855 (-)	618	Protein_864	crossover junction endodeoxyribonuclease RuvC	-
CCZ36_RS04245	-	957009..957761 (-)	753	WP_006123225.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CCZ36_RS04250	pdxT	957823..958416 (-)	594	WP_069737364.1	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	-
CCZ36_RS04255	pdxS	958423..959342 (-)	920	Protein_867	pyridoxal 5'-phosphate synthase lyase subunit PdxS	-
CCZ36_RS04260	-	959486..960034 (-)	549	WP_069737365.1	hypothetical protein	-

Sequence

Protein

• Length: 361 a.a.
• Molecular weight: 38598.08 Da
• Isoelectric Point: 4.7850

>NTDB_id=195085 CCZ36_RS04230 WP_128817050.1 954353..955438(-) (ruvB) [Streptomyces sp. S063]
MNWDETGPETDEPTGPVFDDRLVDADADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLDVGIDVEGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGAIDREIAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA

Nucleotide

• Length: 1086 bp

>NTDB_id=195085 CCZ36_RS04230 WP_128817050.1 954353..955438(-) (ruvB) [Streptomyces sp. S063]
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCCACCGGCCCGGTCTTCGACGACCGGCTGGTCGACGCGGACGC
CGACGGCGAGGACACCGCGGTCGAGGCGGCGCTGCGCCCCAAGGACCTGGACGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCATGTGCTGCTCTCGGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCGATGATCATCGCGGCCGAGATGAACGCCCCGATCCGCATCACGTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCCATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGGGCC
ACCGCGATCCCGCTGGAGCTGCCCCCCTTCACCCTGGTCGGGGCCACCACGCGGGCCGGGCTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGTTTCACCGGCCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGGC
TGCTGGACGTCGGCATCGACGTGGAGGGCGCCGCCGAGATCGCCGGACGCTCCCGGGGCACCCCCCGTATCGCCAACCGG
CTGCTCCGCCGTGTCCGCGACTACGCCCAGGTCAAGGCGGAGGGGGCGATCGACCGGGAGATCGCCGCGGCAGCCCTCAA
GGTGTACGAGGTCGACGCCCGCGGACTCGACCGGCTGGACCGCGCCGTCCTCGGCGCCCTGCTGAAGCTGTTCGGCGGTG
GCCCCGTGGGCCTGTCCACCCTGGCGGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGACTGCTGGCCAGGACCCCGCGTGGCCGGGTCGCCACGCCCGCGGCCTGGGCCCACCTGGGACTGGTCCC
GCCGCAGCACGGAGCAAAGGGACAACAGGGCCTCTTCGGGGCGTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (274-343)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (38-196)

• RuvB AAA lid domain (AAA_lid_4) (199-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.553	92.244	0.485
ruvB	Streptococcus pneumoniae TIGR4	52.778	89.751	0.474
ruvB	Streptococcus pneumoniae R6	52.778	89.751	0.474
ruvB	Streptococcus pneumoniae D39	52.778	89.751	0.474
ruvB	Synechocystis sp. PCC 6803	53.503	86.981	0.465
ruvB	Helicobacter pylori 26695	50.629	88.089	0.446