Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Ga0102493_RS13050 Genome accession   NZ_CP017057
Coordinates   2736538..2737086 (-) Length   182 a.a.
NCBI ID   WP_034903062.1    Uniprot ID   -
Organism   Erythrobacter litoralis strain DSM 8509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2731538..2742086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ga0102493_RS13020 (Ga0102493_11431) hslV 2732331..2732891 (-) 561 WP_034903075.1 ATP-dependent protease subunit HslV -
  Ga0102493_RS13025 (Ga0102493_11432) - 2732946..2733395 (-) 450 WP_034903649.1 outer membrane protein assembly factor BamE -
  Ga0102493_RS13030 (Ga0102493_11433) - 2733721..2734275 (+) 555 WP_034903073.1 ubiquinol-cytochrome C chaperone family protein -
  Ga0102493_RS13035 (Ga0102493_11434) - 2734286..2734837 (+) 552 WP_034903070.1 YceD family protein -
  Ga0102493_RS13040 (Ga0102493_11435) - 2734834..2735757 (-) 924 WP_034903068.1 DMT family transporter -
  Ga0102493_RS13050 (Ga0102493_11437) ssb 2736538..2737086 (-) 549 WP_034903062.1 single-stranded DNA-binding protein Machinery gene
  Ga0102493_RS13055 (Ga0102493_11438) - 2737218..2737910 (-) 693 WP_418251642.1 COQ9 family protein -
  Ga0102493_RS13060 (Ga0102493_11439) - 2737912..2738574 (-) 663 WP_236922231.1 ankyrin repeat domain-containing protein -
  Ga0102493_RS13065 (Ga0102493_11440) - 2738680..2739315 (+) 636 WP_051697865.1 SCO family protein -
  Ga0102493_RS13070 (Ga0102493_11441) - 2739303..2739797 (+) 495 WP_051697863.1 YcgN family cysteine cluster protein -
  Ga0102493_RS13075 (Ga0102493_11442) - 2739794..2740516 (+) 723 WP_034903059.1 M48 family metallopeptidase -
  Ga0102493_RS13080 (Ga0102493_11443) - 2740573..2741151 (+) 579 WP_051697860.1 DUF4402 domain-containing protein -
  Ga0102493_RS13085 (Ga0102493_11444) - 2741227..2741670 (+) 444 WP_051697954.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18474.08 Da        Isoelectric Point: 5.2612

>NTDB_id=194845 Ga0102493_RS13050 WP_034903062.1 2736538..2737086(-) (ssb) [Erythrobacter litoralis strain DSM 8509]
MAGSLNKVMLIGNLGADPEVRTFQNGGKVCNLRVATSESWKDRNTGERQERTEWHSVAIFNEGLAGVAERYLKKGSKVYL
EGQLQTRKWQDQSGNDRYSTEVVLRGPNSVMTMLDGAPGAGGGGGGRSGGFGGGGAGYGDRGAGGQPAGAGGAGGGWNQG
GGGSGGGSGGGNYDDLDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=194845 Ga0102493_RS13050 WP_034903062.1 2736538..2737086(-) (ssb) [Erythrobacter litoralis strain DSM 8509]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTCGGGGCCGACCCCGAAGTGCGCACGTTCCAGAACGGCGG
GAAGGTCTGCAATCTGCGCGTCGCGACGAGCGAGTCGTGGAAGGATCGCAATACCGGCGAGCGACAGGAGCGGACCGAAT
GGCACTCAGTCGCGATTTTCAACGAAGGCCTGGCCGGGGTTGCCGAGCGCTATCTCAAGAAAGGCAGCAAGGTCTATCTC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGAGCGGCAATGACCGTTATTCGACCGAGGTCGTGCTGCGCGGGCC
GAACTCGGTCATGACCATGCTCGACGGCGCGCCCGGCGCAGGCGGCGGCGGCGGCGGTCGTTCCGGCGGTTTCGGCGGCG
GCGGTGCCGGCTATGGCGATCGCGGCGCGGGCGGCCAGCCTGCAGGCGCAGGCGGCGCCGGCGGCGGCTGGAACCAGGGA
GGCGGCGGTTCGGGCGGCGGCTCGGGTGGCGGCAATTACGACGATCTCGACGATGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.171

99.451

0.489
  ssb Glaesserella parasuis strain SC1401

44.974

100

0.467
  ssb Neisseria meningitidis MC58

43.094

99.451

0.429
  ssb Neisseria gonorrhoeae MS11

43.094

99.451

0.429

Multiple sequence alignment