Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BGI51_RS02865 Genome accession   NZ_CP017024
Coordinates   614286..615626 (+) Length   446 a.a.
NCBI ID   WP_187980251.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain KNF2016     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 609286..620626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI51_RS02845 (BGI51_02815) - 609630..610655 (+) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  BGI51_RS02850 (BGI51_02820) - 610723..612345 (-) 1623 WP_187980248.1 NAD+ synthase -
  BGI51_RS02855 (BGI51_02825) - 612477..612725 (+) 249 WP_187980249.1 PP0621 family protein -
  BGI51_RS02860 (BGI51_02830) pilS 612709..614283 (+) 1575 WP_187980250.1 PAS domain-containing sensor histidine kinase Regulator
  BGI51_RS02865 (BGI51_02835) pilR 614286..615626 (+) 1341 WP_187980251.1 sigma-54 dependent transcriptional regulator Regulator
  BGI51_RS02870 (BGI51_02840) thiO 615627..616730 (-) 1104 WP_187980252.1 glycine oxidase ThiO -
  BGI51_RS02875 (BGI51_02845) - 616826..617350 (+) 525 WP_187980253.1 GspH/FimT family pseudopilin -
  BGI51_RS02880 - 617414..617923 (+) 510 WP_252977199.1 GspH/FimT family pseudopilin -
  BGI51_RS02885 (BGI51_02850) pilV 617920..618423 (+) 504 WP_187980254.1 type IV pilus modification protein PilV -
  BGI51_RS02890 (BGI51_02855) - 618420..619517 (+) 1098 WP_187980255.1 PilW family protein -
  BGI51_RS02895 (BGI51_02860) - 619514..619999 (+) 486 WP_187980256.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48852.07 Da        Isoelectric Point: 5.8400

>NTDB_id=194570 BGI51_RS02865 WP_187980251.1 614286..615626(+) (pilR) [Pseudomonas oryzihabitans strain KNF2016]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAVLERESFDLCLTDMRLPDGSGLDLIQFIQQRFPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPAPAVTGASETQLLGESPPMRALRGQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQEISLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGALASH
MLERLARDSGLAAATLGDDALAKLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=194570 BGI51_RS02865 WP_187980251.1 614286..615626(+) (pilR) [Pseudomonas oryzihabitans strain KNF2016]
ATGGCCCGACAGAAAGTCCTGATTGTCGACGATGAACCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGATGAA
ACTCGACACCGCCAGCGCCAAGAACATCGCCGACGCCCGGGCCGTCCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGCCTGCCCGACGGCTCGGGACTGGATCTGATCCAGTTCATCCAGCAACGCTTTCCGCAATTGCCGGTCGCCATG
ATCACCGCCTTCGGCAGTCTGGAAACCGCGGTCCAGGCCCTCAAGGCCGGTGCGTTCGACTACCTCACCAAGCCGGTCGA
CCTGCCGCGCCTGCGCGAGCTGGTGGGCACCGCCCTGCGGCTGTCCGGGCCTGCCCCGGCAGTGACCGGCGCCAGCGAAA
CCCAGCTGCTTGGCGAATCGCCGCCCATGCGCGCCCTGCGGGGCCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTC
TATATCAGCGGGGAATCGGGCAGCGGCAAGGAGCGGGTGGCACGACTGATCCATGAGCAGGGCCCGCGCGCGGGCCGCCC
CTTCGTCCCGGTCAACTGCGGCGCCATCCCTTCGGAACTGGTGGAAAGCGAATTCTTCGGCCATCGCAAGGGCAGCTTCA
CCGGCGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTTCTCGACGAGGTGGCCGACCTG
CCACTGCCGATGCAGGTCAAGCTCCTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTAGGCAGCCAGCAGGAGATCAG
CCTGGACGTGCGCATTCTCAGCGCCACCCACCGGGATCTCGCCGCCGAGGTCGCCGCCGGGACCTTCCGCCAGGATCTCT
ACTACCGCCTCAACGTCATCGAACTGCAGGTGCCGGCTCTGCGCGAACGTCGCGAAGACATCGGCGCCTTGGCCAGCCAC
ATGCTCGAACGTCTGGCACGCGATTCCGGTCTGGCCGCGGCCACGCTGGGCGACGATGCCCTGGCCAAGCTCAAGAGCTA
CAGATTCCCCGGCAACGTGCGGGAACTGGAAAACATGCTGGAGCGGGCCTACACCCTCTGCGAAGGCGACGTCATCCGCC
CGGCCGATCTGCGCCTGGCCGATGCGCCAGCGGCCACCGCCACCGGCGAAGCCAGCCTGGCCAACATCGCCAATCTGGAA
GACCACCTGGAGTCCATCGAGCGCCAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAATCGCACCGCCGCCGCAGA
GCGCCTGGGCCTCTCCTTCCGGTCGATGCGCTACCGACTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.717

100

0.807
  pilR Acinetobacter baumannii strain A118

48.927

100

0.511
  luxO Vibrio cholerae strain A1552

38.235

99.103

0.379

Multiple sequence alignment