Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BGI51_RS02860 Genome accession   NZ_CP017024
Coordinates   612709..614283 (+) Length   524 a.a.
NCBI ID   WP_187980250.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain KNF2016     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 607709..619283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI51_RS02835 (BGI51_02805) pgeF 607754..608485 (-) 732 WP_187980246.1 peptidoglycan editing factor PgeF -
  BGI51_RS02840 (BGI51_02810) rluD 608482..609441 (-) 960 WP_187980247.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BGI51_RS02845 (BGI51_02815) - 609630..610655 (+) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  BGI51_RS02850 (BGI51_02820) - 610723..612345 (-) 1623 WP_187980248.1 NAD+ synthase -
  BGI51_RS02855 (BGI51_02825) - 612477..612725 (+) 249 WP_187980249.1 PP0621 family protein -
  BGI51_RS02860 (BGI51_02830) pilS 612709..614283 (+) 1575 WP_187980250.1 PAS domain-containing sensor histidine kinase Regulator
  BGI51_RS02865 (BGI51_02835) pilR 614286..615626 (+) 1341 WP_187980251.1 sigma-54 dependent transcriptional regulator Regulator
  BGI51_RS02870 (BGI51_02840) thiO 615627..616730 (-) 1104 WP_187980252.1 glycine oxidase ThiO -
  BGI51_RS02875 (BGI51_02845) - 616826..617350 (+) 525 WP_187980253.1 GspH/FimT family pseudopilin -
  BGI51_RS02880 - 617414..617923 (+) 510 WP_252977199.1 GspH/FimT family pseudopilin -
  BGI51_RS02885 (BGI51_02850) pilV 617920..618423 (+) 504 WP_187980254.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57285.97 Da        Isoelectric Point: 7.5342

>NTDB_id=194569 BGI51_RS02860 WP_187980250.1 612709..614283(+) (pilS) [Pseudomonas oryzihabitans strain KNF2016]
MSAATDPGTLRADAVLRLYHLYRIVIGLALVVLISSDLDQHWLRTVDGQLFRQASWAYLAINAVLAVGQRLLRGRAFTLA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLVNPAARRLLGVDDEDTIAPLALG
LAQRLEEWERNPSIRPAPWRAYANGPLLQPSFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELATPDRRLAQIIQDQSRRMNRVVENVLQLSRRQQAAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEPGTLQTHMDPHQLGQILTNLVQNGLRYSCQKNGIGQVWLSTYRDPESDLPILEVVDDGAGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=194569 BGI51_RS02860 WP_187980250.1 612709..614283(+) (pilS) [Pseudomonas oryzihabitans strain KNF2016]
ATGAGCGCCGCGACTGATCCAGGCACCCTGAGAGCCGACGCGGTCCTGCGGCTCTATCATCTCTATCGCATCGTCATCGG
CCTGGCGCTGGTGGTGCTGATTTCCAGCGACCTGGATCAGCACTGGCTGCGCACCGTCGACGGCCAGCTGTTCCGCCAGG
CCAGCTGGGCCTACCTCGCCATCAACGCCGTGCTGGCGGTCGGCCAGCGGTTGTTGCGTGGCCGCGCCTTTACCCTGGCG
CTGATCGACATCCTCGCCCTGGGCGGCCTGTTCTTCCTGGCCGGCGGCATCGCCAGCGGCATGGGCAGTCTGCTGGTGGT
GACCGTCGGGGTGTCCAACGTCCTGATCCGTGGCCGCCGCGGCCTGCTGATCGCCGCCCTGGCCGCCATCGCCCTGCTGC
TGGCGACCGGCTATCTCGACCTGCGCCGCGGCGACAGTGGCAGTGGCTATGTGCAGGCAGCGGGCCTGGGCACCCTCTGC
TTCGCCACGGCGCTGCTGGTTCAAGGCCTGGTCCGGCGCCTGTTGGACAGCCAGGCCCTGGCCGAAACCCGCGCCACCGC
CGTGGCCGAATTGGAAGCCCTCAACGCGCTGATCCTCGAACGCATGCGGACCGGTATCCTGGTATTCGATGCCGAATACC
AGGTGCTGCTGGTGAATCCGGCAGCCCGCCGCCTGCTGGGGGTGGACGACGAGGACACCATCGCTCCCCTGGCCCTGGGG
CTCGCCCAGCGCCTCGAGGAATGGGAGCGCAATCCCAGTATCCGGCCCGCGCCCTGGCGCGCCTATGCCAACGGCCCCCT
GTTGCAACCCAGCTTCGCCCGCCTGCAGCAGGGCGAGGGTGAGCGGGTGCTGACCTTTCTCGAAGACGTCTCACGCATCG
CCCAGCAAGCCCAGCAACTCAAGCTCGCCTCCCTCGGCCGTCTCACCGCCGGCATCGCCCACGAGATCCGCAATCCGCTG
GGCGCCATCAGTCACGCCGCGCAACTGCTGCAGGAATCCGAAGAACTGGCCACGCCGGATCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCGCGGCGGATGAACCGGGTGGTGGAAAACGTCCTGCAGCTGTCACGCCGCCAGCAGGCCGCCCCCCAGC
TGATCGACCTGCGCTACTGGGCGCACCGTTTCGCCGGGGAGCTGCGCCCTACCCTGCCCGCCGGCCAGACGCTGCACGTC
AAGACCGAGCCTGGCACCCTGCAGACGCACATGGATCCTCACCAGCTGGGCCAGATCCTGACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCTGCCAGAAGAATGGCATCGGCCAGGTCTGGCTCAGCACCTACCGCGATCCGGAAAGCGACCTGCCCA
TCCTCGAGGTGGTCGACGACGGAGCCGGCGTCGCCGCCGAGCAGCTCGACCACCTGTTCGAGCCCTTCTTCACCACCGAA
AACAAGGGGACCGGGCTGGGCCTGTACATCTCCCGCGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCCTT
GGCGAATGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(304-369)

PAS domain (PAS_8)

(198-237)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.423

99.237

0.59

Multiple sequence alignment