Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FORC55_RS04965 Genome accession   NZ_CP016987
Coordinates   1021969..1022280 (+) Length   103 a.a.
NCBI ID   WP_001166109.1    Uniprot ID   A0AAX1QU99
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016969..1027280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS04950 (FORC55_0908) lon 1017006..1019366 (+) 2361 WP_001047611.1 endopeptidase La -
  FORC55_RS04955 (FORC55_0909) - 1019550..1019822 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  FORC55_RS04960 (FORC55_0910) ppiD 1019975..1021834 (+) 1860 WP_002031691.1 peptidylprolyl isomerase -
  FORC55_RS04965 (FORC55_0911) comEA 1021969..1022280 (+) 312 WP_001166109.1 ComEA family DNA-binding protein Machinery gene
  FORC55_RS04970 (FORC55_0912) cmk 1022463..1023140 (+) 678 WP_000094751.1 (d)CMP kinase -
  FORC55_RS04975 (FORC55_0913) rpsA 1023249..1024919 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  FORC55_RS04980 (FORC55_0914) ihfB 1025208..1025486 (+) 279 WP_000167341.1 integration host factor subunit beta -
  FORC55_RS04985 (FORC55_0915) - 1025625..1025906 (+) 282 WP_000691492.1 LapA family protein -
  FORC55_RS04990 (FORC55_0916) lapB 1025918..1027087 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10934.73 Da        Isoelectric Point: 5.0506

>NTDB_id=194315 FORC55_RS04965 WP_001166109.1 1021969..1022280(+) (comEA) [Vibrio cholerae strain FORC_055 isolate MFDS]
MQIKTKVVTLLLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFSHI
DDLTNVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=194315 FORC55_RS04965 WP_001166109.1 1021969..1022280(+) (comEA) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGCAAATCAAAACCAAAGTAGTGACATTACTTCTTTCTCTCTGTCTGCCGACATTACCGTTACTGGCCAATGCCGAAGA
AACGGCACCTGCTGCACAGGTAGAAGAAGGTATTGTTATCACCGTCAACATTAACACCGCCTCGGCAGAAGAACTGGCGA
CGTTACTCAAAGGTATCGGGCTTAAGAAAGCTCAGGCGATTGTCGATTATAGAGAAGCCAACGGTCCATTTTCTCATATC
GATGATTTGACGAATGTAAAAGGGATTGGTGAAGCTACGGTGCGCAACAACGCCACGAGGATCTTGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

96.117

100

0.961
  comEA Vibrio cholerae strain A1552

96.117

100

0.961
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544

Multiple sequence alignment