Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9P79_RS13855 Genome accession   NZ_CP016950
Coordinates   395617..396156 (+) Length   179 a.a.
NCBI ID   WP_115705774.1    Uniprot ID   -
Organism   Cupriavidus taiwanensis strain SWF66294     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 390617..401156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P79_RS13845 (A9P79_13605) uvrA 391065..393929 (-) 2865 WP_115705770.1 excinuclease ABC subunit UvrA -
  A9P79_RS13850 (A9P79_13610) - 394155..395417 (+) 1263 WP_115705772.1 MFS transporter -
  A9P79_RS13855 (A9P79_13615) ssb 395617..396156 (+) 540 WP_115705774.1 single-stranded DNA-binding protein Machinery gene
  A9P79_RS13860 (A9P79_13620) - 396433..397479 (+) 1047 WP_240073685.1 porin -
  A9P79_RS13865 (A9P79_13625) - 397516..398487 (+) 972 WP_172582603.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  A9P79_RS13870 (A9P79_13630) - 398484..399419 (+) 936 WP_240073686.1 BMP family lipoprotein -
  A9P79_RS13875 (A9P79_13635) - 399454..400626 (-) 1173 WP_240073688.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18753.50 Da        Isoelectric Point: 5.9517

>NTDB_id=193948 A9P79_RS13855 WP_115705774.1 395617..396156(+) (ssb) [Cupriavidus taiwanensis strain SWF66294]
MASVNKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVAMFGKLAEIAAQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGSGGGGGDEGGYGGGGGGGGYSRESSGGGYGGGRGAQGGGGQQGGAAR
RPQQPASNGFEDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=193948 A9P79_RS13855 WP_115705774.1 395617..396156(+) (ssb) [Cupriavidus taiwanensis strain SWF66294]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCCGAAACGCGCTACATGCCCAGCGGCGACGC
CGTCACCAACCTGCGCCTGGCCACCACCGACCGCTACAAGGACAAGCAGTCGGGCGAGATGAAGGAAGCTACCGAATGGC
ACCGCGTGGCGATGTTCGGCAAGCTGGCCGAGATCGCCGCCCAGTACCTGCGCAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGATCAGTCCGGCCAGGACAAGTACTCCACCGAGATCGTTGCCGACCAGATGCAGAT
GCTGGGTTCACGCCAGGGCAGCGGCGGCGGCGGCGGCGATGAAGGTGGCTACGGCGGTGGCGGCGGCGGTGGCGGTTATA
GCCGCGAATCGTCGGGCGGCGGCTATGGCGGCGGCCGTGGTGCCCAGGGCGGCGGTGGCCAGCAGGGTGGCGCGGCGCGC
CGTCCGCAGCAACCGGCCTCGAACGGCTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.872

100

0.542
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.486
  ssb Neisseria meningitidis MC58

45.763

98.883

0.453
  ssb Neisseria gonorrhoeae MS11

45.198

98.883

0.447

Multiple sequence alignment