Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BED33_RS04990 Genome accession   NZ_CP016937
Coordinates   1130528..1131076 (+) Length   182 a.a.
NCBI ID   WP_049525323.1    Uniprot ID   -
Organism   Yersinia enterocolitica strain YE6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1125528..1136076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BED33_RS04980 (BED33_04980) - 1126756..1127109 (+) 354 WP_005165225.1 MmcQ/YjbR family DNA-binding protein -
  BED33_RS04985 (BED33_04985) uvrA 1127168..1129999 (-) 2832 WP_049525322.1 excinuclease ABC subunit UvrA -
  BED33_RS04990 (BED33_04990) ssb 1130528..1131076 (+) 549 WP_049525323.1 single-stranded DNA-binding protein Machinery gene
  BED33_RS04995 (BED33_04995) - 1131165..1132493 (-) 1329 WP_005165219.1 type II toxin-antitoxin system HipA family toxin -
  BED33_RS05000 (BED33_05000) - 1132495..1132794 (-) 300 WP_020282668.1 helix-turn-helix transcriptional regulator -
  BED33_RS05005 (BED33_05005) - 1133089..1133760 (+) 672 WP_050127116.1 glutathione S-transferase family protein -
  BED33_RS05010 (BED33_05010) - 1134120..1135487 (+) 1368 WP_005165212.1 NCS2 family permease -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19074.06 Da        Isoelectric Point: 4.9567

>NTDB_id=193852 BED33_RS04990 WP_049525323.1 1130528..1131076(+) (ssb) [Yersinia enterocolitica strain YE6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
ASAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=193852 BED33_RS04990 WP_049525323.1 1130528..1131076(+) (ssb) [Yersinia enterocolitica strain YE6]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCATCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.913

100

0.747
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.582
  ssb Neisseria gonorrhoeae MS11

46.277

100

0.478
  ssb Neisseria meningitidis MC58

45.604

100

0.456

Multiple sequence alignment