Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BEN76_RS11745 Genome accession   NZ_CP016896
Coordinates   2461426..2462160 (-) Length   244 a.a.
NCBI ID   WP_076033126.1    Uniprot ID   A0A1P8EKC6
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2456426..2467160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11725 (BEN76_11725) aroB 2457055..2458143 (-) 1089 WP_076033597.1 3-dehydroquinate synthase -
  BEN76_RS11730 (BEN76_11730) aroK 2458167..2458709 (-) 543 WP_004934229.1 shikimate kinase AroK -
  BEN76_RS11735 (BEN76_11735) comQ 2458746..2460842 (-) 2097 WP_171261644.1 type IV pilus secretin PilQ family protein Machinery gene
  BEN76_RS11740 (BEN76_11740) comL 2460902..2461426 (-) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  BEN76_RS11745 (BEN76_11745) comO 2461426..2462160 (-) 735 WP_076033126.1 type 4a pilus biogenesis protein PilO Machinery gene
  BEN76_RS11750 (BEN76_11750) comN 2462157..2462795 (-) 639 WP_076033598.1 PilN domain-containing protein Machinery gene
  BEN76_RS11755 (BEN76_11755) comM 2462782..2463852 (-) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  BEN76_RS11760 (BEN76_11760) ponA 2464019..2466550 (+) 2532 WP_076033127.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27536.41 Da        Isoelectric Point: 6.2644

>NTDB_id=193533 BEN76_RS11745 WP_076033126.1 2461426..2462160(-) (comO) [Acinetobacter soli strain GFJ2]
MKRDPVDHTAPEQAPVQKKRMTVDKFFQQFNTLDMSNYGSWPKSVKITCWIFIFFLVVALGYFVMIRPQLDAIQTARAQE
QNLLNEFKEKESKLRNLQQYQRQLVEMQASFNQQLTQLPKESEIPGLVEDINMTGVNSGLKFKNIRLENEVKQEIFVEQP
ISIEATGDYHAFGAFVSGISALPRIVTMHDFVIEAKPAKETSDIPQVDYSVKAKTYRYIGVDEQNAASSVQPSAAPAAAQ
GGTP

Nucleotide


Download         Length: 735 bp        

>NTDB_id=193533 BEN76_RS11745 WP_076033126.1 2461426..2462160(-) (comO) [Acinetobacter soli strain GFJ2]
ATGAAACGAGATCCAGTCGATCACACGGCACCTGAGCAAGCACCTGTGCAGAAAAAACGCATGACGGTGGATAAGTTTTT
TCAGCAGTTTAATACGCTCGACATGAGCAATTACGGGAGTTGGCCCAAATCGGTCAAAATCACCTGCTGGATATTTATTT
TTTTCTTAGTGGTGGCGCTTGGTTATTTTGTCATGATTCGTCCGCAGTTAGACGCCATACAGACCGCGCGTGCGCAAGAA
CAAAACCTTCTGAACGAGTTTAAAGAAAAAGAATCCAAACTACGCAATCTACAGCAGTATCAGCGTCAATTGGTCGAAAT
GCAGGCCAGCTTTAATCAGCAACTGACGCAACTTCCAAAGGAAAGTGAGATTCCGGGCTTGGTCGAAGACATCAACATGA
CGGGTGTGAACTCGGGTTTAAAATTTAAAAATATTCGGCTTGAAAATGAGGTCAAACAAGAAATTTTTGTAGAGCAGCCA
ATTTCGATTGAAGCCACGGGTGACTACCATGCTTTTGGTGCCTTTGTCAGTGGTATTTCGGCCTTGCCGCGTATCGTGAC
CATGCATGATTTTGTCATTGAAGCAAAACCTGCCAAAGAAACCTCGGATATTCCGCAGGTCGATTACAGCGTCAAGGCGA
AAACATATCGTTATATCGGTGTAGACGAGCAAAACGCTGCCTCGTCGGTTCAGCCATCTGCCGCACCCGCAGCAGCACAA
GGGGGGACACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EKC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

81.224

100

0.816
  pilO Acinetobacter baumannii D1279779

70.417

98.361

0.693

Multiple sequence alignment